Class: ExposomeDatabase

Container for all exposome data including exposures, chemicals, health outcomes, AOPs, studies, and measurements

classDiagram class ExposomeDatabase click ExposomeDatabase href "../ExposomeDatabase/" ExposomeDatabase : adverse_outcome_pathways ExposomeDatabase --> "*" AdverseOutcomePathway : adverse_outcome_pathways click AdverseOutcomePathway href "../AdverseOutcomePathway/" ExposomeDatabase : associations ExposomeDatabase --> "*" Association : associations click Association href "../Association/" ExposomeDatabase : biological_entities ExposomeDatabase --> "*" BiologicalEntity : biological_entities click BiologicalEntity href "../BiologicalEntity/" ExposomeDatabase : chemical_entities ExposomeDatabase --> "*" ChemicalEntity : chemical_entities click ChemicalEntity href "../ChemicalEntity/" ExposomeDatabase : cohorts ExposomeDatabase --> "*" Cohort : cohorts click Cohort href "../Cohort/" ExposomeDatabase : database_records ExposomeDatabase --> "*" DatabaseRecord : database_records click DatabaseRecord href "../DatabaseRecord/" ExposomeDatabase : exposures ExposomeDatabase --> "*" ExposureEvent : exposures click ExposureEvent href "../ExposureEvent/" ExposomeDatabase : health_outcomes ExposomeDatabase --> "*" HealthOutcome : health_outcomes click HealthOutcome href "../HealthOutcome/" ExposomeDatabase : measurements ExposomeDatabase --> "*" Measurement : measurements click Measurement href "../Measurement/" ExposomeDatabase : participants ExposomeDatabase --> "*" Participant : participants click Participant href "../Participant/" ExposomeDatabase : studies ExposomeDatabase --> "*" Study : studies click Study href "../Study/"

Slots

Name	Cardinality and Range	Description	Inheritance
chemical_entities	* ChemicalEntity	Collection of chemical entities including compounds, drugs, and metabolites	direct
exposures	* ExposureEvent	Collection of exposure events (chemical, dietary, environmental, occupational...	direct
health_outcomes	* HealthOutcome	Collection of health outcomes including phenotypes and diseases	direct
adverse_outcome_pathways	* AdverseOutcomePathway	Collection of Adverse Outcome Pathways linking exposures to health outcomes	direct
studies	* Study	Collection of research studies and surveys	direct
cohorts	* Cohort	Collection of study cohorts	direct
participants	* Participant	Collection of study participants	direct
measurements	* Measurement	Collection of measurements and observations	direct
biological_entities	* BiologicalEntity	Collection of biological entities (genes, proteins, cells, anatomical structu...	direct
database_records	* DatabaseRecord	Collection of records from external databases	direct
associations	* Association	Collection of associations between entities	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/diatomsRcool/exposome-schema

Mappings

Mapping Type	Mapped Value
self	exposome_schema:ExposomeDatabase
native	exposome_schema:ExposomeDatabase

LinkML Source

Direct

name: ExposomeDatabase
description: Container for all exposome data including exposures, chemicals, health
  outcomes, AOPs, studies, and measurements
from_schema: https://w3id.org/diatomsRcool/exposome-schema
attributes:
  chemical_entities:
    name: chemical_entities
    description: Collection of chemical entities including compounds, drugs, and metabolites
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    domain_of:
    - ExposomeDatabase
    range: ChemicalEntity
    multivalued: true
    inlined: true
    inlined_as_list: true
  exposures:
    name: exposures
    description: Collection of exposure events (chemical, dietary, environmental,
      occupational)
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    domain_of:
    - ExposomeDatabase
    range: ExposureEvent
    multivalued: true
    inlined: true
    inlined_as_list: true
  health_outcomes:
    name: health_outcomes
    description: Collection of health outcomes including phenotypes and diseases
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    domain_of:
    - ExposomeDatabase
    range: HealthOutcome
    multivalued: true
    inlined: true
    inlined_as_list: true
  adverse_outcome_pathways:
    name: adverse_outcome_pathways
    description: Collection of Adverse Outcome Pathways linking exposures to health
      outcomes
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    domain_of:
    - ExposomeDatabase
    range: AdverseOutcomePathway
    multivalued: true
    inlined: true
    inlined_as_list: true
  studies:
    name: studies
    description: Collection of research studies and surveys
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    domain_of:
    - ExposomeDatabase
    range: Study
    multivalued: true
    inlined: true
    inlined_as_list: true
  cohorts:
    name: cohorts
    description: Collection of study cohorts
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    domain_of:
    - ExposomeDatabase
    range: Cohort
    multivalued: true
    inlined: true
    inlined_as_list: true
  participants:
    name: participants
    description: Collection of study participants
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    domain_of:
    - ExposomeDatabase
    range: Participant
    multivalued: true
    inlined: true
    inlined_as_list: true
  measurements:
    name: measurements
    description: Collection of measurements and observations
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    domain_of:
    - ExposomeDatabase
    range: Measurement
    multivalued: true
    inlined: true
    inlined_as_list: true
  biological_entities:
    name: biological_entities
    description: Collection of biological entities (genes, proteins, cells, anatomical
      structures)
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    domain_of:
    - ExposomeDatabase
    range: BiologicalEntity
    multivalued: true
    inlined: true
    inlined_as_list: true
  database_records:
    name: database_records
    description: Collection of records from external databases
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    domain_of:
    - ExposomeDatabase
    range: DatabaseRecord
    multivalued: true
    inlined: true
    inlined_as_list: true
  associations:
    name: associations
    description: Collection of associations between entities
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    domain_of:
    - ExposomeDatabase
    range: Association
    multivalued: true
    inlined: true
    inlined_as_list: true
tree_root: true

Induced

name: ExposomeDatabase
description: Container for all exposome data including exposures, chemicals, health
  outcomes, AOPs, studies, and measurements
from_schema: https://w3id.org/diatomsRcool/exposome-schema
attributes:
  chemical_entities:
    name: chemical_entities
    description: Collection of chemical entities including compounds, drugs, and metabolites
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: chemical_entities
    owner: ExposomeDatabase
    domain_of:
    - ExposomeDatabase
    range: ChemicalEntity
    multivalued: true
    inlined: true
    inlined_as_list: true
  exposures:
    name: exposures
    description: Collection of exposure events (chemical, dietary, environmental,
      occupational)
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: exposures
    owner: ExposomeDatabase
    domain_of:
    - ExposomeDatabase
    range: ExposureEvent
    multivalued: true
    inlined: true
    inlined_as_list: true
  health_outcomes:
    name: health_outcomes
    description: Collection of health outcomes including phenotypes and diseases
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: health_outcomes
    owner: ExposomeDatabase
    domain_of:
    - ExposomeDatabase
    range: HealthOutcome
    multivalued: true
    inlined: true
    inlined_as_list: true
  adverse_outcome_pathways:
    name: adverse_outcome_pathways
    description: Collection of Adverse Outcome Pathways linking exposures to health
      outcomes
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: adverse_outcome_pathways
    owner: ExposomeDatabase
    domain_of:
    - ExposomeDatabase
    range: AdverseOutcomePathway
    multivalued: true
    inlined: true
    inlined_as_list: true
  studies:
    name: studies
    description: Collection of research studies and surveys
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: studies
    owner: ExposomeDatabase
    domain_of:
    - ExposomeDatabase
    range: Study
    multivalued: true
    inlined: true
    inlined_as_list: true
  cohorts:
    name: cohorts
    description: Collection of study cohorts
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: cohorts
    owner: ExposomeDatabase
    domain_of:
    - ExposomeDatabase
    range: Cohort
    multivalued: true
    inlined: true
    inlined_as_list: true
  participants:
    name: participants
    description: Collection of study participants
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: participants
    owner: ExposomeDatabase
    domain_of:
    - ExposomeDatabase
    range: Participant
    multivalued: true
    inlined: true
    inlined_as_list: true
  measurements:
    name: measurements
    description: Collection of measurements and observations
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: measurements
    owner: ExposomeDatabase
    domain_of:
    - ExposomeDatabase
    range: Measurement
    multivalued: true
    inlined: true
    inlined_as_list: true
  biological_entities:
    name: biological_entities
    description: Collection of biological entities (genes, proteins, cells, anatomical
      structures)
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: biological_entities
    owner: ExposomeDatabase
    domain_of:
    - ExposomeDatabase
    range: BiologicalEntity
    multivalued: true
    inlined: true
    inlined_as_list: true
  database_records:
    name: database_records
    description: Collection of records from external databases
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: database_records
    owner: ExposomeDatabase
    domain_of:
    - ExposomeDatabase
    range: DatabaseRecord
    multivalued: true
    inlined: true
    inlined_as_list: true
  associations:
    name: associations
    description: Collection of associations between entities
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: associations
    owner: ExposomeDatabase
    domain_of:
    - ExposomeDatabase
    range: Association
    multivalued: true
    inlined: true
    inlined_as_list: true
tree_root: true