Class: Gene

A gene or genetic element

classDiagram class Gene click Gene href "../Gene/" BiologicalEntity <|-- Gene click BiologicalEntity href "../BiologicalEntity/" Gene : category Gene : description Gene : id Gene : in_taxon Gene : name Gene : ncbigene_id Gene : symbol Gene : xref

Inheritance

NamedThing
- BiologicalEntity
  - Gene

Slots

Name	Cardinality and Range	Description	Inheritance
ncbigene_id	0..1 String	NCBI Gene identifier	direct
symbol	0..1 String	Gene symbol	direct
in_taxon	0..1 String	Taxonomic group	direct
id	1 Uriorcurie	A unique identifier for a thing	NamedThing
name	0..1 String	A human-readable name for a thing	NamedThing
description	0..1 String	A human-readable description for a thing	NamedThing
category	* String	A category or type for a thing	NamedThing
xref	* Uriorcurie	External database cross-references	NamedThing

Usages

used by	used in	type	used
Protein	encoded_by_gene	range	Gene
ChemicalToGeneAssociation	gene	range	Gene
GeneToDiseaseAssociation	gene	range	Gene

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/diatomsRcool/exposome-schema

Mappings

Mapping Type	Mapped Value
self	exposome_schema:Gene
native	exposome_schema:Gene

LinkML Source

Direct

name: Gene
description: A gene or genetic element
from_schema: https://w3id.org/diatomsRcool/exposome-schema
is_a: BiologicalEntity
slots:
- ncbigene_id
- symbol
- in_taxon

Induced

name: Gene
description: A gene or genetic element
from_schema: https://w3id.org/diatomsRcool/exposome-schema
is_a: BiologicalEntity
attributes:
  ncbigene_id:
    name: ncbigene_id
    description: NCBI Gene identifier
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: ncbigene_id
    owner: Gene
    domain_of:
    - Gene
    range: string
    pattern: ^\d+$
  symbol:
    name: symbol
    description: Gene symbol
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: symbol
    owner: Gene
    domain_of:
    - Gene
    range: string
  in_taxon:
    name: in_taxon
    description: Taxonomic group
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: in_taxon
    owner: Gene
    domain_of:
    - Gene
    range: string
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: Gene
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Gene
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Gene
    domain_of:
    - NamedThing
    range: string
  category:
    name: category
    description: A category or type for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: category
    owner: Gene
    domain_of:
    - NamedThing
    range: string
    multivalued: true
  xref:
    name: xref
    description: External database cross-references
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: xref
    owner: Gene
    domain_of:
    - NamedThing
    range: uriorcurie
    multivalued: true