Class: GeneticVariantToPhenotypeAssociation

An association between a genetic variant and a phenotype (e.g., from GWAS)

URI: exposome_schema:GeneticVariantToPhenotypeAssociation

classDiagram class GeneticVariantToPhenotypeAssociation click GeneticVariantToPhenotypeAssociation href "../GeneticVariantToPhenotypeAssociation/" Association <|-- GeneticVariantToPhenotypeAssociation click Association href "../Association/" GeneticVariantToPhenotypeAssociation : category GeneticVariantToPhenotypeAssociation : description GeneticVariantToPhenotypeAssociation : effect_size GeneticVariantToPhenotypeAssociation : genetic_variant GeneticVariantToPhenotypeAssociation : id GeneticVariantToPhenotypeAssociation : name GeneticVariantToPhenotypeAssociation : p_value GeneticVariantToPhenotypeAssociation : phenotype GeneticVariantToPhenotypeAssociation --> "0..1" Phenotype : phenotype click Phenotype href "../Phenotype/" GeneticVariantToPhenotypeAssociation : xref

Inheritance

NamedThing
- Association
  - GeneticVariantToPhenotypeAssociation

Slots

Name	Cardinality and Range	Description	Inheritance
genetic_variant	0..1 String	Genetic variant identifier	direct
phenotype	0..1 Phenotype	The phenotype being measured	direct
p_value	0..1 Float	Statistical p-value	direct
effect_size	0..1 Float	Effect size of association	direct
id	1 Uriorcurie	A unique identifier for a thing	NamedThing
name	0..1 String	A human-readable name for a thing	NamedThing
description	0..1 String	A human-readable description for a thing	NamedThing
category	* String	A category or type for a thing	NamedThing
xref	* Uriorcurie	External database cross-references	NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/diatomsRcool/exposome-schema

Mappings

Mapping Type	Mapped Value
self	exposome_schema:GeneticVariantToPhenotypeAssociation
native	exposome_schema:GeneticVariantToPhenotypeAssociation

LinkML Source

Direct

name: GeneticVariantToPhenotypeAssociation
description: An association between a genetic variant and a phenotype (e.g., from
  GWAS)
from_schema: https://w3id.org/diatomsRcool/exposome-schema
is_a: Association
slots:
- genetic_variant
- phenotype
- p_value
- effect_size

Induced

name: GeneticVariantToPhenotypeAssociation
description: An association between a genetic variant and a phenotype (e.g., from
  GWAS)
from_schema: https://w3id.org/diatomsRcool/exposome-schema
is_a: Association
attributes:
  genetic_variant:
    name: genetic_variant
    description: Genetic variant identifier
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: genetic_variant
    owner: GeneticVariantToPhenotypeAssociation
    domain_of:
    - GeneticVariantToPhenotypeAssociation
    range: string
  phenotype:
    name: phenotype
    description: The phenotype being measured
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: phenotype
    owner: GeneticVariantToPhenotypeAssociation
    domain_of:
    - PhenotypeMeasurement
    - ExposureToPhenotypeAssociation
    - GeneticVariantToPhenotypeAssociation
    range: Phenotype
  p_value:
    name: p_value
    description: Statistical p-value
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: p_value
    owner: GeneticVariantToPhenotypeAssociation
    domain_of:
    - GeneticVariantToPhenotypeAssociation
    range: float
  effect_size:
    name: effect_size
    description: Effect size of association
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: effect_size
    owner: GeneticVariantToPhenotypeAssociation
    domain_of:
    - GeneticVariantToPhenotypeAssociation
    range: float
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: GeneticVariantToPhenotypeAssociation
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: GeneticVariantToPhenotypeAssociation
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: GeneticVariantToPhenotypeAssociation
    domain_of:
    - NamedThing
    range: string
  category:
    name: category
    description: A category or type for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: category
    owner: GeneticVariantToPhenotypeAssociation
    domain_of:
    - NamedThing
    range: string
    multivalued: true
  xref:
    name: xref
    description: External database cross-references
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: xref
    owner: GeneticVariantToPhenotypeAssociation
    domain_of:
    - NamedThing
    range: uriorcurie
    multivalued: true