Class: MammalianPhenotype

A phenotype observed in mammalian model organisms

classDiagram class MammalianPhenotype click MammalianPhenotype href "../MammalianPhenotype/" Phenotype <|-- MammalianPhenotype click Phenotype href "../Phenotype/" MammalianPhenotype : category MammalianPhenotype : description MammalianPhenotype : hp_id MammalianPhenotype : id MammalianPhenotype : mp_id MammalianPhenotype : name MammalianPhenotype : onset_age MammalianPhenotype : phenotype_category MammalianPhenotype : severity MammalianPhenotype : upheno_id MammalianPhenotype : xref

Inheritance

NamedThing
- HealthOutcome
  - Phenotype
    - MammalianPhenotype

Slots

Name	Cardinality and Range	Description	Inheritance
mp_id	0..1 Uriorcurie	Mammalian Phenotype Ontology identifier	direct
hp_id	0..1 Uriorcurie	Human Phenotype Ontology identifier	Phenotype
upheno_id	0..1 Uriorcurie	Unified phenotype ontology identifier	Phenotype
phenotype_category	0..1 String	Category of phenotype	Phenotype
severity	0..1 String	Severity of phenotype or disease	Phenotype
onset_age	0..1 String	Age of onset	Phenotype
id	1 Uriorcurie	A unique identifier for a thing	NamedThing
name	0..1 String	A human-readable name for a thing	NamedThing
description	0..1 String	A human-readable description for a thing	NamedThing
category	* String	A category or type for a thing	NamedThing
xref	* Uriorcurie	External database cross-references	NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/diatomsRcool/exposome-schema

Mappings

Mapping Type	Mapped Value
self	MP:0000001
native	exposome_schema:MammalianPhenotype

LinkML Source

Direct

name: MammalianPhenotype
description: A phenotype observed in mammalian model organisms
from_schema: https://w3id.org/diatomsRcool/exposome-schema
is_a: Phenotype
slots:
- mp_id
class_uri: MP:0000001

Induced

name: MammalianPhenotype
description: A phenotype observed in mammalian model organisms
from_schema: https://w3id.org/diatomsRcool/exposome-schema
is_a: Phenotype
attributes:
  mp_id:
    name: mp_id
    description: Mammalian Phenotype Ontology identifier
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: mp_id
    owner: MammalianPhenotype
    domain_of:
    - MammalianPhenotype
    range: uriorcurie
    pattern: ^MP:\d{7}$
  hp_id:
    name: hp_id
    description: Human Phenotype Ontology identifier
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: hp_id
    owner: MammalianPhenotype
    domain_of:
    - Phenotype
    range: uriorcurie
    pattern: ^HP:\d{7}$
  upheno_id:
    name: upheno_id
    description: Unified phenotype ontology identifier
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: upheno_id
    owner: MammalianPhenotype
    domain_of:
    - Phenotype
    range: uriorcurie
    pattern: ^UPHENO:\d+$
  phenotype_category:
    name: phenotype_category
    description: Category of phenotype
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: phenotype_category
    owner: MammalianPhenotype
    domain_of:
    - Phenotype
    range: string
  severity:
    name: severity
    description: Severity of phenotype or disease
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: severity
    owner: MammalianPhenotype
    domain_of:
    - Phenotype
    range: string
  onset_age:
    name: onset_age
    description: Age of onset
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: onset_age
    owner: MammalianPhenotype
    domain_of:
    - Phenotype
    range: string
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: MammalianPhenotype
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: MammalianPhenotype
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: MammalianPhenotype
    domain_of:
    - NamedThing
    range: string
  category:
    name: category
    description: A category or type for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: category
    owner: MammalianPhenotype
    domain_of:
    - NamedThing
    range: string
    multivalued: true
  xref:
    name: xref
    description: External database cross-references
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: xref
    owner: MammalianPhenotype
    domain_of:
    - NamedThing
    range: uriorcurie
    multivalued: true
class_uri: MP:0000001