Class: Organism

An individual organism

classDiagram class Organism click Organism href "../Organism/" BiologicalEntity <|-- Organism click BiologicalEntity href "../BiologicalEntity/" Organism : category Organism : description Organism : id Organism : name Organism : species Organism : taxon_id Organism : xref

Inheritance

NamedThing
- BiologicalEntity
  - Organism

Slots

Name	Cardinality and Range	Description	Inheritance
species	0..1 String	Species name	direct
taxon_id	0..1 String	NCBI Taxonomy identifier	direct
id	1 Uriorcurie	A unique identifier for a thing	NamedThing
name	0..1 String	A human-readable name for a thing	NamedThing
description	0..1 String	A human-readable description for a thing	NamedThing
category	* String	A category or type for a thing	NamedThing
xref	* Uriorcurie	External database cross-references	NamedThing

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/diatomsRcool/exposome-schema

Mappings

Mapping Type	Mapped Value
self	exposome_schema:Organism
native	exposome_schema:Organism

LinkML Source

Direct

name: Organism
description: An individual organism
from_schema: https://w3id.org/diatomsRcool/exposome-schema
is_a: BiologicalEntity
slots:
- species
- taxon_id

Induced

name: Organism
description: An individual organism
from_schema: https://w3id.org/diatomsRcool/exposome-schema
is_a: BiologicalEntity
attributes:
  species:
    name: species
    description: Species name
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: species
    owner: Organism
    domain_of:
    - Participant
    - Organism
    range: string
  taxon_id:
    name: taxon_id
    description: NCBI Taxonomy identifier
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: taxon_id
    owner: Organism
    domain_of:
    - Organism
    range: string
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: Organism
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Organism
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Organism
    domain_of:
    - NamedThing
    range: string
  category:
    name: category
    description: A category or type for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: category
    owner: Organism
    domain_of:
    - NamedThing
    range: string
    multivalued: true
  xref:
    name: xref
    description: External database cross-references
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: xref
    owner: Organism
    domain_of:
    - NamedThing
    range: uriorcurie
    multivalued: true