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Class: Phenotype

An observable characteristic or trait

URI: HP:0000118

classDiagram class Phenotype click Phenotype href "../Phenotype/" HealthOutcome <|-- Phenotype click HealthOutcome href "../HealthOutcome/" Phenotype <|-- MammalianPhenotype click MammalianPhenotype href "../MammalianPhenotype/" Phenotype <|-- ZebrafishPhenotype click ZebrafishPhenotype href "../ZebrafishPhenotype/" Phenotype : category Phenotype : description Phenotype : hp_id Phenotype : id Phenotype : name Phenotype : onset_age Phenotype : phenotype_category Phenotype : severity Phenotype : upheno_id Phenotype : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
hp_id 0..1
Uriorcurie		 Human Phenotype Ontology identifier direct
upheno_id 0..1
Uriorcurie		 Unified phenotype ontology identifier direct
phenotype_category 0..1
String		 Category of phenotype direct
severity 0..1
String		 Severity of phenotype or disease direct
onset_age 0..1
String		 Age of onset direct
id 1
Uriorcurie		 A unique identifier for a thing NamedThing
name 0..1
String		 A human-readable name for a thing NamedThing
description 0..1
String		 A human-readable description for a thing NamedThing
category *
String		 A category or type for a thing NamedThing
xref *
Uriorcurie		 External database cross-references NamedThing

Usages

used by used in type used
PhenotypeMeasurement phenotype range Phenotype
ExposureToPhenotypeAssociation phenotype range Phenotype
GeneticVariantToPhenotypeAssociation phenotype range Phenotype

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/diatomsRcool/exposome-schema

Mappings

Mapping Type Mapped Value
self HP:0000118
native exposome_schema:Phenotype

LinkML Source

Direct

name: Phenotype
description: An observable characteristic or trait
from_schema: https://w3id.org/diatomsRcool/exposome-schema
is_a: HealthOutcome
slots:
- hp_id
- upheno_id
- phenotype_category
- severity
- onset_age
class_uri: HP:0000118

Induced

name: Phenotype
description: An observable characteristic or trait
from_schema: https://w3id.org/diatomsRcool/exposome-schema
is_a: HealthOutcome
attributes:
  hp_id:
    name: hp_id
    description: Human Phenotype Ontology identifier
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: hp_id
    owner: Phenotype
    domain_of:
    - Phenotype
    range: uriorcurie
    pattern: ^HP:\d{7}$
  upheno_id:
    name: upheno_id
    description: Unified phenotype ontology identifier
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: upheno_id
    owner: Phenotype
    domain_of:
    - Phenotype
    range: uriorcurie
    pattern: ^UPHENO:\d+$
  phenotype_category:
    name: phenotype_category
    description: Category of phenotype
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: phenotype_category
    owner: Phenotype
    domain_of:
    - Phenotype
    range: string
  severity:
    name: severity
    description: Severity of phenotype or disease
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: severity
    owner: Phenotype
    domain_of:
    - Phenotype
    range: string
  onset_age:
    name: onset_age
    description: Age of onset
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: onset_age
    owner: Phenotype
    domain_of:
    - Phenotype
    range: string
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: Phenotype
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: Phenotype
    domain_of:
    - NamedThing
    range: string
  description:
    name: description
    description: A human-readable description for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: Phenotype
    domain_of:
    - NamedThing
    range: string
  category:
    name: category
    description: A category or type for a thing
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: category
    owner: Phenotype
    domain_of:
    - NamedThing
    range: string
    multivalued: true
  xref:
    name: xref
    description: External database cross-references
    from_schema: https://w3id.org/diatomsRcool/exposome-schema
    rank: 1000
    alias: xref
    owner: Phenotype
    domain_of:
    - NamedThing
    range: uriorcurie
    multivalued: true
class_uri: HP:0000118