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Class: Assay

The specific method or assay used to measure an endpoint

URI: outcomes_model:Assay

classDiagram class Assay click Assay href "../Assay/" NamedEntity <|-- Assay click NamedEntity href "../NamedEntity/" Assay : assay_type Assay --> "0..1" AssayTypeEnum : assay_type click AssayTypeEnum href "../AssayTypeEnum/" Assay : description Assay : environmental_conditions Assay --> "*" EnvironmentalCondition : environmental_conditions click EnvironmentalCondition href "../EnvironmentalCondition/" Assay : id Assay : instrumentation Assay : sop_reference

Inheritance

Slots

Name Cardinality and Range Description Inheritance
assay_type 0..1
AssayTypeEnum		 Type of assay or method, constrained to OBI assay terms direct
instrumentation 0..1
String		 Specific instruments or equipment used direct
environmental_conditions *
EnvironmentalCondition		 Environmental conditions during measurement direct
sop_reference 0..1
String		 Reference to standard operating procedure direct
id 1
Uriorcurie		 A unique identifier NamedEntity
description 0..1
String		 A detailed description NamedEntity

Usages

used by used in type used
Measurement method_assay range Assay
CFTRFunctionMeasurement method_assay range Assay
BALFSputumMeasurement method_assay range Assay
LungFunctionMeasurement method_assay range Assay
EGFRSignalingMeasurement method_assay range Assay
TranscriptionFactorExpressionMeasurement method_assay range Assay
CiliaBeatFrequencyMeasurement method_assay range Assay
ASLHeightMeasurement method_assay range Assay
MucociliaryClearanceMeasurement method_assay range Assay
GobletCellMeasurement method_assay range Assay
OxidativeStressMeasurement method_assay range Assay

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/outcomes-model

Mappings

Mapping Type Mapped Value
self outcomes_model:Assay
native outcomes_model:Assay

LinkML Source

Direct

name: Assay
description: The specific method or assay used to measure an endpoint
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: NamedEntity
slots:
- assay_type
- instrumentation
- environmental_conditions
- sop_reference

Induced

name: Assay
description: The specific method or assay used to measure an endpoint
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: NamedEntity
attributes:
  assay_type:
    name: assay_type
    description: Type of assay or method, constrained to OBI assay terms
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: assay_type
    owner: Assay
    domain_of:
    - Assay
    range: AssayTypeEnum
  instrumentation:
    name: instrumentation
    description: Specific instruments or equipment used
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: instrumentation
    owner: Assay
    domain_of:
    - Assay
    - DetectionMethod
    range: string
  environmental_conditions:
    name: environmental_conditions
    description: Environmental conditions during measurement
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: environmental_conditions
    owner: Assay
    domain_of:
    - Assay
    range: EnvironmentalCondition
    multivalued: true
    inlined: true
  sop_reference:
    name: sop_reference
    description: Reference to standard operating procedure
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: sop_reference
    owner: Assay
    domain_of:
    - Assay
    range: string
  id:
    name: id
    description: A unique identifier
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    identifier: true
    alias: id
    owner: Assay
    domain_of:
    - NamedEntity
    range: uriorcurie
    required: true
  description:
    name: description
    description: A detailed description
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: description
    owner: Assay
    domain_of:
    - NamedEntity
    range: string