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Class: BALFSputumMeasurement

Measurement of bronchoalveolar lavage fluid or sputum components

URI: outcomes_model:BALFSputumMeasurement

classDiagram class BALFSputumMeasurement click BALFSputumMeasurement href "../BALFSputumMeasurement/" Measurement <|-- BALFSputumMeasurement click Measurement href "../Measurement/" BALFSputumMeasurement : cell_free_dna BALFSputumMeasurement --> "0..1" QuantityValue : cell_free_dna click QuantityValue href "../QuantityValue/" BALFSputumMeasurement : cytokine_levels BALFSputumMeasurement : description BALFSputumMeasurement : id BALFSputumMeasurement : inflammatory_cell_profile BALFSputumMeasurement --> "0..1" InflammatoryCellProfile : inflammatory_cell_profile click InflammatoryCellProfile href "../InflammatoryCellProfile/" BALFSputumMeasurement : input_sample BALFSputumMeasurement --> "0..1" InputSample : input_sample click InputSample href "../InputSample/" BALFSputumMeasurement : method_assay BALFSputumMeasurement --> "0..1" Assay : method_assay click Assay href "../Assay/" BALFSputumMeasurement : microbiome_analysis BALFSputumMeasurement --> "0..1" MicrobiomeAnalysis : microbiome_analysis click MicrobiomeAnalysis href "../MicrobiomeAnalysis/" BALFSputumMeasurement : protein_concentration BALFSputumMeasurement --> "0..1" QuantityValue : protein_concentration click QuantityValue href "../QuantityValue/" BALFSputumMeasurement : protocol_notes BALFSputumMeasurement : sample_collection_details BALFSputumMeasurement --> "0..1" SampleCollection : sample_collection_details click SampleCollection href "../SampleCollection/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
sample_collection_details 0..1
SampleCollection		 Sample collection protocol details direct
inflammatory_cell_profile 0..1
InflammatoryCellProfile		 Inflammatory cell type profile direct
microbiome_analysis 0..1
MicrobiomeAnalysis		 Microbiome composition analysis direct
cytokine_levels *
String		 Cytokine and chemokine levels direct
protein_concentration 0..1
QuantityValue		 Total protein concentration direct
cell_free_dna 0..1
QuantityValue		 Cell-free DNA measurement direct
input_sample 0..1
InputSample		 Description of input samples and manipulations Measurement
method_assay 0..1
Assay		 The method or assay used Measurement
protocol_notes 0..1
String		 Protocol or SOP notes Measurement
id 1
Uriorcurie		 A unique identifier NamedEntity
description 0..1
String		 A detailed description NamedEntity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/outcomes-model

Mappings

Mapping Type Mapped Value
self outcomes_model:BALFSputumMeasurement
native outcomes_model:BALFSputumMeasurement

LinkML Source

Direct

name: BALFSputumMeasurement
description: Measurement of bronchoalveolar lavage fluid or sputum components
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: Measurement
slots:
- sample_collection_details
- inflammatory_cell_profile
- microbiome_analysis
- cytokine_levels
- protein_concentration
- cell_free_dna

Induced

name: BALFSputumMeasurement
description: Measurement of bronchoalveolar lavage fluid or sputum components
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: Measurement
attributes:
  sample_collection_details:
    name: sample_collection_details
    description: Sample collection protocol details
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: sample_collection_details
    owner: BALFSputumMeasurement
    domain_of:
    - BALFSputumMeasurement
    range: SampleCollection
    inlined: true
  inflammatory_cell_profile:
    name: inflammatory_cell_profile
    description: Inflammatory cell type profile
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: inflammatory_cell_profile
    owner: BALFSputumMeasurement
    domain_of:
    - BALFSputumMeasurement
    range: InflammatoryCellProfile
    inlined: true
  microbiome_analysis:
    name: microbiome_analysis
    description: Microbiome composition analysis
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: microbiome_analysis
    owner: BALFSputumMeasurement
    domain_of:
    - BALFSputumMeasurement
    range: MicrobiomeAnalysis
    inlined: true
  cytokine_levels:
    name: cytokine_levels
    description: Cytokine and chemokine levels
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: cytokine_levels
    owner: BALFSputumMeasurement
    domain_of:
    - BALFSputumMeasurement
    range: string
    multivalued: true
  protein_concentration:
    name: protein_concentration
    description: Total protein concentration
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: protein_concentration
    owner: BALFSputumMeasurement
    domain_of:
    - BALFSputumMeasurement
    range: QuantityValue
    inlined: true
  cell_free_dna:
    name: cell_free_dna
    description: Cell-free DNA measurement
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: cell_free_dna
    owner: BALFSputumMeasurement
    domain_of:
    - BALFSputumMeasurement
    range: QuantityValue
    inlined: true
  input_sample:
    name: input_sample
    description: Description of input samples and manipulations
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: input_sample
    owner: BALFSputumMeasurement
    domain_of:
    - Measurement
    range: InputSample
  method_assay:
    name: method_assay
    description: The method or assay used
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: method_assay
    owner: BALFSputumMeasurement
    domain_of:
    - Measurement
    range: Assay
  protocol_notes:
    name: protocol_notes
    description: Protocol or SOP notes
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: protocol_notes
    owner: BALFSputumMeasurement
    domain_of:
    - Measurement
    range: string
  id:
    name: id
    description: A unique identifier
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    identifier: true
    alias: id
    owner: BALFSputumMeasurement
    domain_of:
    - NamedEntity
    range: uriorcurie
    required: true
  description:
    name: description
    description: A detailed description
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: description
    owner: BALFSputumMeasurement
    domain_of:
    - NamedEntity
    range: string