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Class: CellCultureConditions

Detailed cell culture parameters

URI: outcomes_model:CellCultureConditions

classDiagram class CellCultureConditions click CellCultureConditions href "../CellCultureConditions/" NamedEntity <|-- CellCultureConditions click NamedEntity href "../NamedEntity/" CellCultureConditions : co2_percentage CellCultureConditions --> "0..1" QuantityValue : co2_percentage click QuantityValue href "../QuantityValue/" CellCultureConditions : culture_medium CellCultureConditions : days_at_ali CellCultureConditions : description CellCultureConditions : donor_count CellCultureConditions : humidity CellCultureConditions --> "0..1" QuantityValue : humidity click QuantityValue href "../QuantityValue/" CellCultureConditions : id CellCultureConditions : passage_number CellCultureConditions : replicates_per_donor CellCultureConditions : substrate_type CellCultureConditions : temperature CellCultureConditions --> "0..1" QuantityValue : temperature click QuantityValue href "../QuantityValue/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
culture_medium 0..1
String		 Cell culture medium formulation direct
days_at_ali 0..1
Integer		 Days at air-liquid interface direct
passage_number 0..1
Integer		 Cell passage number direct
substrate_type 0..1
String		 Type of culture substrate direct
temperature 0..1
QuantityValue		 Temperature setting direct
humidity 0..1
QuantityValue		 Humidity level direct
co2_percentage 0..1
QuantityValue		 CO2 percentage in incubator direct
donor_count 0..1
Integer		 Number of unique donors direct
replicates_per_donor 0..1
Integer		 Number of replicates per donor direct
id 1
Uriorcurie		 A unique identifier NamedEntity
description 0..1
String		 A detailed description NamedEntity

Usages

used by used in type used
CFTRFunctionMeasurement cell_culture_details range CellCultureConditions

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/outcomes-model

Mappings

Mapping Type Mapped Value
self outcomes_model:CellCultureConditions
native outcomes_model:CellCultureConditions

LinkML Source

Direct

name: CellCultureConditions
description: Detailed cell culture parameters
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: NamedEntity
slots:
- culture_medium
- days_at_ali
- passage_number
- substrate_type
- temperature
- humidity
- co2_percentage
- donor_count
- replicates_per_donor

Induced

name: CellCultureConditions
description: Detailed cell culture parameters
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: NamedEntity
attributes:
  culture_medium:
    name: culture_medium
    description: Cell culture medium formulation
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: culture_medium
    owner: CellCultureConditions
    domain_of:
    - CellCultureConditions
    range: string
  days_at_ali:
    name: days_at_ali
    description: Days at air-liquid interface
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: days_at_ali
    owner: CellCultureConditions
    domain_of:
    - CellCultureConditions
    range: integer
  passage_number:
    name: passage_number
    description: Cell passage number
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: passage_number
    owner: CellCultureConditions
    domain_of:
    - CellCultureConditions
    range: integer
  substrate_type:
    name: substrate_type
    description: Type of culture substrate
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: substrate_type
    owner: CellCultureConditions
    domain_of:
    - CellCultureConditions
    range: string
  temperature:
    name: temperature
    description: Temperature setting
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: temperature
    owner: CellCultureConditions
    domain_of:
    - CellCultureConditions
    - EnvironmentalCondition
    range: QuantityValue
    inlined: true
  humidity:
    name: humidity
    description: Humidity level
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: humidity
    owner: CellCultureConditions
    domain_of:
    - CellCultureConditions
    - EnvironmentalCondition
    range: QuantityValue
    inlined: true
  co2_percentage:
    name: co2_percentage
    description: CO2 percentage in incubator
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: co2_percentage
    owner: CellCultureConditions
    domain_of:
    - CellCultureConditions
    - EnvironmentalCondition
    range: QuantityValue
    inlined: true
  donor_count:
    name: donor_count
    description: Number of unique donors
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: donor_count
    owner: CellCultureConditions
    domain_of:
    - CellCultureConditions
    range: integer
  replicates_per_donor:
    name: replicates_per_donor
    description: Number of replicates per donor
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: replicates_per_donor
    owner: CellCultureConditions
    domain_of:
    - CellCultureConditions
    range: integer
  id:
    name: id
    description: A unique identifier
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    identifier: true
    alias: id
    owner: CellCultureConditions
    domain_of:
    - NamedEntity
    range: uriorcurie
    required: true
  description:
    name: description
    description: A detailed description
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: description
    owner: CellCultureConditions
    domain_of:
    - NamedEntity
    range: string