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Class: CiliaBeatFrequencyMeasurement

Measurement of ciliary beat frequency

URI: outcomes_model:CiliaBeatFrequencyMeasurement

classDiagram class CiliaBeatFrequencyMeasurement click CiliaBeatFrequencyMeasurement href "../CiliaBeatFrequencyMeasurement/" Measurement <|-- CiliaBeatFrequencyMeasurement click Measurement href "../Measurement/" CiliaBeatFrequencyMeasurement : active_area_percentage CiliaBeatFrequencyMeasurement --> "0..1" QuantityValue : active_area_percentage click QuantityValue href "../QuantityValue/" CiliaBeatFrequencyMeasurement : beat_frequency_hz CiliaBeatFrequencyMeasurement --> "0..1" QuantityValue : beat_frequency_hz click QuantityValue href "../QuantityValue/" CiliaBeatFrequencyMeasurement : cell_type_ratios CiliaBeatFrequencyMeasurement : cilia_length CiliaBeatFrequencyMeasurement --> "0..1" QuantityValue : cilia_length click QuantityValue href "../QuantityValue/" CiliaBeatFrequencyMeasurement : cilia_per_cell CiliaBeatFrequencyMeasurement --> "0..1" QuantityValue : cilia_per_cell click QuantityValue href "../QuantityValue/" CiliaBeatFrequencyMeasurement : ciliary_motion_patterns CiliaBeatFrequencyMeasurement : description CiliaBeatFrequencyMeasurement : id CiliaBeatFrequencyMeasurement : imaging_protocol CiliaBeatFrequencyMeasurement --> "0..1" ImagingProtocol : imaging_protocol click ImagingProtocol href "../ImagingProtocol/" CiliaBeatFrequencyMeasurement : input_sample CiliaBeatFrequencyMeasurement --> "0..1" InputSample : input_sample click InputSample href "../InputSample/" CiliaBeatFrequencyMeasurement : method_assay CiliaBeatFrequencyMeasurement --> "0..1" Assay : method_assay click Assay href "../Assay/" CiliaBeatFrequencyMeasurement : percentage_ciliated_cells CiliaBeatFrequencyMeasurement --> "0..1" QuantityValue : percentage_ciliated_cells click QuantityValue href "../QuantityValue/" CiliaBeatFrequencyMeasurement : protocol_notes

Inheritance

Slots

Name Cardinality and Range Description Inheritance
beat_frequency_hz 0..1
QuantityValue		 Ciliary beat frequency in Hz direct
active_area_percentage 0..1
QuantityValue		 Percentage of active ciliated area direct
imaging_protocol 0..1
ImagingProtocol		 Imaging protocol and parameters direct
cilia_per_cell 0..1
QuantityValue		 Number of cilia per cell direct
cilia_length 0..1
QuantityValue		 Length of cilia direct
percentage_ciliated_cells 0..1
QuantityValue		 Percentage of cells that are ciliated direct
ciliary_motion_patterns 0..1
String		 Patterns of ciliary motion direct
cell_type_ratios 0..1
String		 Ratios between different cell types direct
input_sample 0..1
InputSample		 Description of input samples and manipulations Measurement
method_assay 0..1
Assay		 The method or assay used Measurement
protocol_notes 0..1
String		 Protocol or SOP notes Measurement
id 1
Uriorcurie		 A unique identifier NamedEntity
description 0..1
String		 A detailed description NamedEntity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/outcomes-model

Mappings

Mapping Type Mapped Value
self outcomes_model:CiliaBeatFrequencyMeasurement
native outcomes_model:CiliaBeatFrequencyMeasurement

LinkML Source

Direct

name: CiliaBeatFrequencyMeasurement
description: Measurement of ciliary beat frequency
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: Measurement
slots:
- beat_frequency_hz
- active_area_percentage
- imaging_protocol
- cilia_per_cell
- cilia_length
- percentage_ciliated_cells
- ciliary_motion_patterns
- cell_type_ratios

Induced

name: CiliaBeatFrequencyMeasurement
description: Measurement of ciliary beat frequency
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: Measurement
attributes:
  beat_frequency_hz:
    name: beat_frequency_hz
    description: Ciliary beat frequency in Hz
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: beat_frequency_hz
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - CiliaBeatFrequencyMeasurement
    range: QuantityValue
    inlined: true
  active_area_percentage:
    name: active_area_percentage
    description: Percentage of active ciliated area
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: active_area_percentage
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - CiliaBeatFrequencyMeasurement
    range: QuantityValue
    inlined: true
  imaging_protocol:
    name: imaging_protocol
    description: Imaging protocol and parameters
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: imaging_protocol
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - CiliaBeatFrequencyMeasurement
    - ASLHeightMeasurement
    range: ImagingProtocol
    inlined: true
  cilia_per_cell:
    name: cilia_per_cell
    description: Number of cilia per cell
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: cilia_per_cell
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - CiliaBeatFrequencyMeasurement
    range: QuantityValue
    inlined: true
  cilia_length:
    name: cilia_length
    description: Length of cilia
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: cilia_length
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - CiliaBeatFrequencyMeasurement
    range: QuantityValue
    inlined: true
  percentage_ciliated_cells:
    name: percentage_ciliated_cells
    description: Percentage of cells that are ciliated
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: percentage_ciliated_cells
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - CiliaBeatFrequencyMeasurement
    range: QuantityValue
    inlined: true
  ciliary_motion_patterns:
    name: ciliary_motion_patterns
    description: Patterns of ciliary motion
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: ciliary_motion_patterns
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - CiliaBeatFrequencyMeasurement
    range: string
  cell_type_ratios:
    name: cell_type_ratios
    description: Ratios between different cell types
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: cell_type_ratios
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - CiliaBeatFrequencyMeasurement
    range: string
  input_sample:
    name: input_sample
    description: Description of input samples and manipulations
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: input_sample
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - Measurement
    range: InputSample
  method_assay:
    name: method_assay
    description: The method or assay used
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: method_assay
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - Measurement
    range: Assay
  protocol_notes:
    name: protocol_notes
    description: Protocol or SOP notes
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: protocol_notes
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - Measurement
    range: string
  id:
    name: id
    description: A unique identifier
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    identifier: true
    alias: id
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - NamedEntity
    range: uriorcurie
    required: true
  description:
    name: description
    description: A detailed description
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: description
    owner: CiliaBeatFrequencyMeasurement
    domain_of:
    - NamedEntity
    range: string