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Class: GeneExpressionAnalysis

Gene expression measurement methodology

URI: outcomes_model:GeneExpressionAnalysis

classDiagram class GeneExpressionAnalysis click GeneExpressionAnalysis href "../GeneExpressionAnalysis/" NamedEntity <|-- GeneExpressionAnalysis click NamedEntity href "../NamedEntity/" GeneExpressionAnalysis : analysis_method GeneExpressionAnalysis : description GeneExpressionAnalysis : id GeneExpressionAnalysis : normalization_genes GeneExpressionAnalysis : primers_used GeneExpressionAnalysis : sequencing_depth GeneExpressionAnalysis : sequencing_platform

Inheritance

Slots

Name Cardinality and Range Description Inheritance
analysis_method 0..1
String		 Method for analysis (qRT-PCR, RNA-seq) direct
normalization_genes *
String		 Genes used for normalization direct
primers_used *
String		 PCR primers used direct
sequencing_platform 0..1
String		 Platform used for sequencing direct
sequencing_depth 0..1
Integer		 Sequencing depth or read count direct
id 1
Uriorcurie		 A unique identifier NamedEntity
description 0..1
String		 A detailed description NamedEntity

Usages

used by used in type used
TranscriptionFactorExpressionMeasurement gene_expression_analysis range GeneExpressionAnalysis
GobletCellMeasurement gene_expression_analysis range GeneExpressionAnalysis

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/outcomes-model

Mappings

Mapping Type Mapped Value
self outcomes_model:GeneExpressionAnalysis
native outcomes_model:GeneExpressionAnalysis

LinkML Source

Direct

name: GeneExpressionAnalysis
description: Gene expression measurement methodology
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: NamedEntity
slots:
- analysis_method
- normalization_genes
- primers_used
- sequencing_platform
- sequencing_depth

Induced

name: GeneExpressionAnalysis
description: Gene expression measurement methodology
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: NamedEntity
attributes:
  analysis_method:
    name: analysis_method
    description: Method for analysis (qRT-PCR, RNA-seq)
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: analysis_method
    owner: GeneExpressionAnalysis
    domain_of:
    - GeneExpressionAnalysis
    range: string
  normalization_genes:
    name: normalization_genes
    description: Genes used for normalization
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: normalization_genes
    owner: GeneExpressionAnalysis
    domain_of:
    - GeneExpressionAnalysis
    range: string
    multivalued: true
  primers_used:
    name: primers_used
    description: PCR primers used
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: primers_used
    owner: GeneExpressionAnalysis
    domain_of:
    - GeneExpressionAnalysis
    range: string
    multivalued: true
  sequencing_platform:
    name: sequencing_platform
    description: Platform used for sequencing
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: sequencing_platform
    owner: GeneExpressionAnalysis
    domain_of:
    - GeneExpressionAnalysis
    range: string
  sequencing_depth:
    name: sequencing_depth
    description: Sequencing depth or read count
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: sequencing_depth
    owner: GeneExpressionAnalysis
    domain_of:
    - GeneExpressionAnalysis
    range: integer
  id:
    name: id
    description: A unique identifier
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    identifier: true
    alias: id
    owner: GeneExpressionAnalysis
    domain_of:
    - NamedEntity
    range: uriorcurie
    required: true
  description:
    name: description
    description: A detailed description
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: description
    owner: GeneExpressionAnalysis
    domain_of:
    - NamedEntity
    range: string