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Class: ImagingProtocol

Details about imaging parameters and protocols

URI: outcomes_model:ImagingProtocol

classDiagram class ImagingProtocol click ImagingProtocol href "../ImagingProtocol/" NamedEntity <|-- ImagingProtocol click NamedEntity href "../NamedEntity/" ImagingProtocol : description ImagingProtocol : frame_rate ImagingProtocol --> "0..1" QuantityValue : frame_rate click QuantityValue href "../QuantityValue/" ImagingProtocol : id ImagingProtocol : imaging_duration ImagingProtocol --> "0..1" QuantityValue : imaging_duration click QuantityValue href "../QuantityValue/" ImagingProtocol : imaging_intervals ImagingProtocol : imaging_modality ImagingProtocol : probe_positioning ImagingProtocol : spatial_resolution ImagingProtocol --> "0..1" QuantityValue : spatial_resolution click QuantityValue href "../QuantityValue/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
imaging_modality 0..1
String		 Imaging modality used (confocal, OCT, etc direct
frame_rate 0..1
QuantityValue		 Image acquisition frame rate direct
imaging_duration 0..1
QuantityValue		 Duration of imaging session direct
imaging_intervals 0..1
String		 Time intervals between image acquisitions direct
spatial_resolution 0..1
QuantityValue		 Spatial resolution of imaging direct
probe_positioning 0..1
String		 Probe or sensor positioning protocol direct
id 1
Uriorcurie		 A unique identifier NamedEntity
description 0..1
String		 A detailed description NamedEntity

Usages

used by used in type used
CiliaBeatFrequencyMeasurement imaging_protocol range ImagingProtocol
ASLHeightMeasurement imaging_protocol range ImagingProtocol

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/outcomes-model

Mappings

Mapping Type Mapped Value
self outcomes_model:ImagingProtocol
native outcomes_model:ImagingProtocol

LinkML Source

Direct

name: ImagingProtocol
description: Details about imaging parameters and protocols
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: NamedEntity
slots:
- imaging_modality
- frame_rate
- imaging_duration
- imaging_intervals
- spatial_resolution
- probe_positioning

Induced

name: ImagingProtocol
description: Details about imaging parameters and protocols
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: NamedEntity
attributes:
  imaging_modality:
    name: imaging_modality
    description: Imaging modality used (confocal, OCT, etc.)
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: imaging_modality
    owner: ImagingProtocol
    domain_of:
    - ImagingProtocol
    range: string
  frame_rate:
    name: frame_rate
    description: Image acquisition frame rate
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: frame_rate
    owner: ImagingProtocol
    domain_of:
    - ImagingProtocol
    range: QuantityValue
    inlined: true
  imaging_duration:
    name: imaging_duration
    description: Duration of imaging session
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: imaging_duration
    owner: ImagingProtocol
    domain_of:
    - ImagingProtocol
    range: QuantityValue
    inlined: true
  imaging_intervals:
    name: imaging_intervals
    description: Time intervals between image acquisitions
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: imaging_intervals
    owner: ImagingProtocol
    domain_of:
    - ImagingProtocol
    range: string
  spatial_resolution:
    name: spatial_resolution
    description: Spatial resolution of imaging
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: spatial_resolution
    owner: ImagingProtocol
    domain_of:
    - ImagingProtocol
    range: QuantityValue
    inlined: true
  probe_positioning:
    name: probe_positioning
    description: Probe or sensor positioning protocol
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: probe_positioning
    owner: ImagingProtocol
    domain_of:
    - ImagingProtocol
    range: string
  id:
    name: id
    description: A unique identifier
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    identifier: true
    alias: id
    owner: ImagingProtocol
    domain_of:
    - NamedEntity
    range: uriorcurie
    required: true
  description:
    name: description
    description: A detailed description
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: description
    owner: ImagingProtocol
    domain_of:
    - NamedEntity
    range: string