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Class: MucociliaryClearanceMeasurement

Measurement of mucociliary clearance/transport

URI: outcomes_model:MucociliaryClearanceMeasurement

classDiagram class MucociliaryClearanceMeasurement click MucociliaryClearanceMeasurement href "../MucociliaryClearanceMeasurement/" Measurement <|-- MucociliaryClearanceMeasurement click Measurement href "../Measurement/" MucociliaryClearanceMeasurement : bacterial_biofilm_details MucociliaryClearanceMeasurement : bacterial_load MucociliaryClearanceMeasurement --> "0..1" QuantityValue : bacterial_load click QuantityValue href "../QuantityValue/" MucociliaryClearanceMeasurement : biofilm_clearance_rate MucociliaryClearanceMeasurement --> "0..1" QuantityValue : biofilm_clearance_rate click QuantityValue href "../QuantityValue/" MucociliaryClearanceMeasurement : description MucociliaryClearanceMeasurement : directionality MucociliaryClearanceMeasurement : fluorescent_tracers MucociliaryClearanceMeasurement --> "*" FluorescentLabel : fluorescent_tracers click FluorescentLabel href "../FluorescentLabel/" MucociliaryClearanceMeasurement : id MucociliaryClearanceMeasurement : input_sample MucociliaryClearanceMeasurement --> "0..1" InputSample : input_sample click InputSample href "../InputSample/" MucociliaryClearanceMeasurement : method_assay MucociliaryClearanceMeasurement --> "0..1" Assay : method_assay click Assay href "../Assay/" MucociliaryClearanceMeasurement : mucus_layer_thickness MucociliaryClearanceMeasurement --> "0..1" QuantityValue : mucus_layer_thickness click QuantityValue href "../QuantityValue/" MucociliaryClearanceMeasurement : particle_tracking_method MucociliaryClearanceMeasurement : protocol_notes MucociliaryClearanceMeasurement : transport_rate MucociliaryClearanceMeasurement --> "0..1" QuantityValue : transport_rate click QuantityValue href "../QuantityValue/" MucociliaryClearanceMeasurement : viral_infection_details MucociliaryClearanceMeasurement : viral_spread_rate MucociliaryClearanceMeasurement --> "0..1" QuantityValue : viral_spread_rate click QuantityValue href "../QuantityValue/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
transport_rate 0..1
QuantityValue		 Mucociliary transport rate direct
directionality 0..1
String		 Directionality of mucociliary transport direct
particle_tracking_method 0..1
String		 Method used for tracking particles or mucus direct
fluorescent_tracers *
FluorescentLabel		 Fluorescent tracers used for tracking direct
mucus_layer_thickness 0..1
QuantityValue		 Thickness of mucus layer direct
bacterial_biofilm_details 0..1
String		 Details about bacterial biofilm preparation and characteristics direct
viral_infection_details 0..1
String		 Details about viral infection protocol direct
biofilm_clearance_rate 0..1
QuantityValue		 Rate of bacterial biofilm clearance direct
bacterial_load 0..1
QuantityValue		 Bacterial load (CFU or similar) direct
viral_spread_rate 0..1
QuantityValue		 Rate of viral spread direct
input_sample 0..1
InputSample		 Description of input samples and manipulations Measurement
method_assay 0..1
Assay		 The method or assay used Measurement
protocol_notes 0..1
String		 Protocol or SOP notes Measurement
id 1
Uriorcurie		 A unique identifier NamedEntity
description 0..1
String		 A detailed description NamedEntity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/outcomes-model

Mappings

Mapping Type Mapped Value
self outcomes_model:MucociliaryClearanceMeasurement
native outcomes_model:MucociliaryClearanceMeasurement

LinkML Source

Direct

name: MucociliaryClearanceMeasurement
description: Measurement of mucociliary clearance/transport
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: Measurement
slots:
- transport_rate
- directionality
- particle_tracking_method
- fluorescent_tracers
- mucus_layer_thickness
- bacterial_biofilm_details
- viral_infection_details
- biofilm_clearance_rate
- bacterial_load
- viral_spread_rate

Induced

name: MucociliaryClearanceMeasurement
description: Measurement of mucociliary clearance/transport
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: Measurement
attributes:
  transport_rate:
    name: transport_rate
    description: Mucociliary transport rate
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: transport_rate
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - MucociliaryClearanceMeasurement
    range: QuantityValue
    inlined: true
  directionality:
    name: directionality
    description: Directionality of mucociliary transport
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: directionality
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - MucociliaryClearanceMeasurement
    range: string
  particle_tracking_method:
    name: particle_tracking_method
    description: Method used for tracking particles or mucus
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: particle_tracking_method
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - MucociliaryClearanceMeasurement
    range: string
  fluorescent_tracers:
    name: fluorescent_tracers
    description: Fluorescent tracers used for tracking
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: fluorescent_tracers
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - MucociliaryClearanceMeasurement
    range: FluorescentLabel
    multivalued: true
    inlined: true
  mucus_layer_thickness:
    name: mucus_layer_thickness
    description: Thickness of mucus layer
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: mucus_layer_thickness
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - MucociliaryClearanceMeasurement
    range: QuantityValue
    inlined: true
  bacterial_biofilm_details:
    name: bacterial_biofilm_details
    description: Details about bacterial biofilm preparation and characteristics
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: bacterial_biofilm_details
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - MucociliaryClearanceMeasurement
    range: string
  viral_infection_details:
    name: viral_infection_details
    description: Details about viral infection protocol
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: viral_infection_details
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - MucociliaryClearanceMeasurement
    range: string
  biofilm_clearance_rate:
    name: biofilm_clearance_rate
    description: Rate of bacterial biofilm clearance
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: biofilm_clearance_rate
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - MucociliaryClearanceMeasurement
    range: QuantityValue
    inlined: true
  bacterial_load:
    name: bacterial_load
    description: Bacterial load (CFU or similar)
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: bacterial_load
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - MucociliaryClearanceMeasurement
    range: QuantityValue
    inlined: true
  viral_spread_rate:
    name: viral_spread_rate
    description: Rate of viral spread
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: viral_spread_rate
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - MucociliaryClearanceMeasurement
    range: QuantityValue
    inlined: true
  input_sample:
    name: input_sample
    description: Description of input samples and manipulations
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: input_sample
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - Measurement
    range: InputSample
  method_assay:
    name: method_assay
    description: The method or assay used
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: method_assay
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - Measurement
    range: Assay
  protocol_notes:
    name: protocol_notes
    description: Protocol or SOP notes
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: protocol_notes
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - Measurement
    range: string
  id:
    name: id
    description: A unique identifier
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    identifier: true
    alias: id
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - NamedEntity
    range: uriorcurie
    required: true
  description:
    name: description
    description: A detailed description
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: description
    owner: MucociliaryClearanceMeasurement
    domain_of:
    - NamedEntity
    range: string