Skip to content

Class: SampleCollection

Details about biological sample collection

URI: outcomes_model:SampleCollection

classDiagram class SampleCollection click SampleCollection href "../SampleCollection/" NamedEntity <|-- SampleCollection click NamedEntity href "../NamedEntity/" SampleCollection : collection_method SampleCollection : description SampleCollection : id SampleCollection : processing_time SampleCollection --> "0..1" QuantityValue : processing_time click QuantityValue href "../QuantityValue/" SampleCollection : sample_volume SampleCollection --> "0..1" QuantityValue : sample_volume click QuantityValue href "../QuantityValue/" SampleCollection : storage_conditions

Inheritance

Slots

Name Cardinality and Range Description Inheritance
collection_method 0..1
String		 Method for sample collection direct
processing_time 0..1
QuantityValue		 Time from collection to processing direct
storage_conditions 0..1
String		 Storage temperature and conditions direct
sample_volume 0..1
QuantityValue		 Volume of sample collected direct
id 1
Uriorcurie		 A unique identifier NamedEntity
description 0..1
String		 A detailed description NamedEntity

Usages

used by used in type used
BALFSputumMeasurement sample_collection_details range SampleCollection

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/outcomes-model

Mappings

Mapping Type Mapped Value
self outcomes_model:SampleCollection
native outcomes_model:SampleCollection

LinkML Source

Direct

name: SampleCollection
description: Details about biological sample collection
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: NamedEntity
slots:
- collection_method
- processing_time
- storage_conditions
- sample_volume

Induced

name: SampleCollection
description: Details about biological sample collection
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: NamedEntity
attributes:
  collection_method:
    name: collection_method
    description: Method for sample collection
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: collection_method
    owner: SampleCollection
    domain_of:
    - SampleCollection
    range: string
  processing_time:
    name: processing_time
    description: Time from collection to processing
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: processing_time
    owner: SampleCollection
    domain_of:
    - SampleCollection
    range: QuantityValue
    inlined: true
  storage_conditions:
    name: storage_conditions
    description: Storage temperature and conditions
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: storage_conditions
    owner: SampleCollection
    domain_of:
    - SampleCollection
    range: string
  sample_volume:
    name: sample_volume
    description: Volume of sample collected
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: sample_volume
    owner: SampleCollection
    domain_of:
    - SampleCollection
    range: QuantityValue
    inlined: true
  id:
    name: id
    description: A unique identifier
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    identifier: true
    alias: id
    owner: SampleCollection
    domain_of:
    - NamedEntity
    range: uriorcurie
    required: true
  description:
    name: description
    description: A detailed description
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: description
    owner: SampleCollection
    domain_of:
    - NamedEntity
    range: string