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Class: StainingProtocol

Histological or immunofluorescence staining protocol

URI: outcomes_model:StainingProtocol

classDiagram class StainingProtocol click StainingProtocol href "../StainingProtocol/" NamedEntity <|-- StainingProtocol click NamedEntity href "../NamedEntity/" StainingProtocol : antibodies_used StainingProtocol : description StainingProtocol : fixation_method StainingProtocol : id StainingProtocol : incubation_conditions StainingProtocol : staining_type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
staining_type 0..1
String		 Type of staining (histological, immunofluorescence) direct
antibodies_used *
String		 Antibodies used in staining direct
fixation_method 0..1
String		 Method for tissue/cell fixation direct
incubation_conditions 0..1
String		 Incubation time and temperature direct
id 1
Uriorcurie		 A unique identifier NamedEntity
description 0..1
String		 A detailed description NamedEntity

Usages

used by used in type used
TranscriptionFactorExpressionMeasurement staining_protocol range StainingProtocol
GobletCellMeasurement staining_protocol range StainingProtocol

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/outcomes-model

Mappings

Mapping Type Mapped Value
self outcomes_model:StainingProtocol
native outcomes_model:StainingProtocol

LinkML Source

Direct

name: StainingProtocol
description: Histological or immunofluorescence staining protocol
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: NamedEntity
slots:
- staining_type
- antibodies_used
- fixation_method
- incubation_conditions

Induced

name: StainingProtocol
description: Histological or immunofluorescence staining protocol
from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
is_a: NamedEntity
attributes:
  staining_type:
    name: staining_type
    description: Type of staining (histological, immunofluorescence)
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: staining_type
    owner: StainingProtocol
    domain_of:
    - StainingProtocol
    range: string
  antibodies_used:
    name: antibodies_used
    description: Antibodies used in staining
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: antibodies_used
    owner: StainingProtocol
    domain_of:
    - StainingProtocol
    range: string
    multivalued: true
  fixation_method:
    name: fixation_method
    description: Method for tissue/cell fixation
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: fixation_method
    owner: StainingProtocol
    domain_of:
    - StainingProtocol
    range: string
  incubation_conditions:
    name: incubation_conditions
    description: Incubation time and temperature
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: incubation_conditions
    owner: StainingProtocol
    domain_of:
    - StainingProtocol
    range: string
  id:
    name: id
    description: A unique identifier
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    identifier: true
    alias: id
    owner: StainingProtocol
    domain_of:
    - NamedEntity
    range: uriorcurie
    required: true
  description:
    name: description
    description: A detailed description
    from_schema: https://w3id.org/EHS-Data-Standards/outcomes-model
    rank: 1000
    alias: description
    owner: StainingProtocol
    domain_of:
    - NamedEntity
    range: string