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Class: ASLOutput

Measurement results from an airway surface liquid assay. Contains the measured values for ASL height, periciliary layer depth, and ion composition.

URI: soma:ASLOutput

 classDiagram
    class ASLOutput
    click ASLOutput href "../ASLOutput/"
      AssayOutputMeasurement <|-- ASLOutput
        click AssayOutputMeasurement href "../AssayOutputMeasurement/"

      ASLOutput : asl_height_um





        ASLOutput --> "0..1" QuantityValue : asl_height_um
        click QuantityValue href "../QuantityValue/"



      ASLOutput : asl_ph





        ASLOutput --> "0..1" QuantityValue : asl_ph
        click QuantityValue href "../QuantityValue/"



      ASLOutput : description

      ASLOutput : id

      ASLOutput : ion_composition

      ASLOutput : mucus_layer_thickness





        ASLOutput --> "0..1" QuantityValue : mucus_layer_thickness
        click QuantityValue href "../QuantityValue/"



      ASLOutput : name

      ASLOutput : periciliary_layer_depth





        ASLOutput --> "0..1" QuantityValue : periciliary_layer_depth
        click QuantityValue href "../QuantityValue/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
asl_height_um 0..1
QuantityValue		 Airway surface liquid height in micrometers direct
periciliary_layer_depth 0..1
QuantityValue		 Depth of the periciliary layer in micrometers direct
mucus_layer_thickness 0..1
QuantityValue		 Thickness of the mucus gel layer in micrometers direct
ion_composition 0..1
String		 Ionic composition (Cl-, Na+, K+) direct
asl_ph 0..1
QuantityValue		 pH of airway surface liquid direct
id 1
Uriorcurie		 A unique identifier for the entity NamedThing
name 0..1
String		 A human-readable name for the entity NamedThing
description 0..1
String		 A detailed description of the entity NamedThing

Usages

used by used in type used
ASLAssay has_specified_output range ASLOutput

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/soma

Mappings

Mapping Type Mapped Value
self soma:ASLOutput
native soma:ASLOutput

LinkML Source

Direct

name: ASLOutput
description: Measurement results from an airway surface liquid assay. Contains the
  measured values for ASL height, periciliary layer depth, and ion composition.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
slots:
- asl_height_um
- periciliary_layer_depth
- mucus_layer_thickness
- ion_composition
- asl_ph

Induced

name: ASLOutput
description: Measurement results from an airway surface liquid assay. Contains the
  measured values for ASL height, periciliary layer depth, and ion composition.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
attributes:
  asl_height_um:
    name: asl_height_um
    description: Airway surface liquid height in micrometers. TIER 1 - primary measurement
      for ASL assays.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: asl_height_um
    owner: ASLOutput
    domain_of:
    - ASLOutput
    range: QuantityValue
    inlined: true
  periciliary_layer_depth:
    name: periciliary_layer_depth
    description: Depth of the periciliary layer in micrometers. TIER 1 - helps give
      confidence to the outcome.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: periciliary_layer_depth
    owner: ASLOutput
    domain_of:
    - ASLOutput
    range: QuantityValue
    inlined: true
  mucus_layer_thickness:
    name: mucus_layer_thickness
    description: Thickness of the mucus gel layer in micrometers. TIER 2.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: mucus_layer_thickness
    owner: ASLOutput
    domain_of:
    - ASLOutput
    - MucociliaryClearanceOutput
    range: QuantityValue
    inlined: true
  ion_composition:
    name: ion_composition
    description: Ionic composition (Cl-, Na+, K+). TIER 3 - not critical for comparison
      but relevant for mechanism.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: ion_composition
    owner: ASLOutput
    domain_of:
    - ASLOutput
    range: string
  asl_ph:
    name: asl_ph
    description: pH of airway surface liquid. TIER 3.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: asl_ph
    owner: ASLOutput
    domain_of:
    - ASLOutput
    range: QuantityValue
    inlined: true
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: ASLOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: ASLOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string
  description:
    name: description
    description: A detailed description of the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: ASLOutput
    domain_of:
    - NamedThing
    range: string