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Class: AdverseOutcome

An adverse health outcome at the organism or population level that represents the apical endpoint of an Adverse Outcome Pathway. This is the final, clinically or ecologically relevant effect.

URI: soma:AdverseOutcome

 classDiagram
    class AdverseOutcome
    click AdverseOutcome href "../AdverseOutcome/"
      NamedThing <|-- AdverseOutcome
        click NamedThing href "../NamedThing/"

      AdverseOutcome : aopwiki_id

      AdverseOutcome : biological_process

      AdverseOutcome : description

      AdverseOutcome : id

      AdverseOutcome : name

      AdverseOutcome : occurs_in_anatomy

      AdverseOutcome : outcome_level





        AdverseOutcome --> "0..1" OutcomeLevelEnum : outcome_level
        click OutcomeLevelEnum href "../OutcomeLevelEnum/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
outcome_level 0..1
OutcomeLevelEnum		 The level at which the adverse outcome manifests (individual, population) direct
biological_process 0..1
Uriorcurie		 The biological process affected by this key event direct
occurs_in_anatomy 0..1
Uriorcurie		 The anatomical location where this key event occurs direct
aopwiki_id 0..1
String		 The AOP-Wiki identifier for this entity (e direct
id 1
Uriorcurie		 A unique identifier for the entity NamedThing
name 0..1
String		 A human-readable name for the entity NamedThing
description 0..1
String		 A detailed description of the entity NamedThing

Usages

used by used in type used
AdverseOutcomePathway adverse_outcome range AdverseOutcome

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/soma

Mappings

Mapping Type Mapped Value
self soma:AdverseOutcome
native soma:AdverseOutcome

LinkML Source

Direct

name: AdverseOutcome
description: An adverse health outcome at the organism or population level that represents
  the apical endpoint of an Adverse Outcome Pathway. This is the final, clinically
  or ecologically relevant effect.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: NamedThing
slots:
- outcome_level
- biological_process
- occurs_in_anatomy
- aopwiki_id

Induced

name: AdverseOutcome
description: An adverse health outcome at the organism or population level that represents
  the apical endpoint of an Adverse Outcome Pathway. This is the final, clinically
  or ecologically relevant effect.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: NamedThing
attributes:
  outcome_level:
    name: outcome_level
    description: The level at which the adverse outcome manifests (individual, population).
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: outcome_level
    owner: AdverseOutcome
    domain_of:
    - AdverseOutcome
    range: OutcomeLevelEnum
  biological_process:
    name: biological_process
    description: The biological process affected by this key event. Should reference
      a GO biological process term.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: biological_process
    owner: AdverseOutcome
    domain_of:
    - KeyEvent
    - AdverseOutcome
    range: uriorcurie
    pattern: ^GO:\d{7}$
  occurs_in_anatomy:
    name: occurs_in_anatomy
    description: The anatomical location where this key event occurs. Should reference
      a UBERON anatomy term.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: occurs_in_anatomy
    owner: AdverseOutcome
    domain_of:
    - KeyEvent
    - AdverseOutcome
    range: uriorcurie
    pattern: ^UBERON:\d{7}$
  aopwiki_id:
    name: aopwiki_id
    description: The AOP-Wiki identifier for this entity (e.g., "AOP:411" for an AOP,
      "KE:1234" for a key event).
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: aopwiki_id
    owner: AdverseOutcome
    domain_of:
    - KeyEvent
    - AdverseOutcome
    - AdverseOutcomePathway
    range: string
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: AdverseOutcome
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: AdverseOutcome
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string
  description:
    name: description
    description: A detailed description of the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: AdverseOutcome
    domain_of:
    - NamedThing
    range: string