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Class: CellCultureConditions

Detailed cell culture parameters including medium, environment, and timing.

URI: soma:CellCultureConditions

 classDiagram
    class CellCultureConditions
    click CellCultureConditions href "../CellCultureConditions/"
      NamedEntity <|-- CellCultureConditions
        click NamedEntity href "../NamedEntity/"

      CellCultureConditions : cell_culture_growth_mode





        CellCultureConditions --> "0..1" CellCultureGrowthModeEnum : cell_culture_growth_mode
        click CellCultureGrowthModeEnum href "../CellCultureGrowthModeEnum/"



      CellCultureConditions : culture_media





        CellCultureConditions --> "0..1" CellCultureMedium : culture_media
        click CellCultureMedium href "../CellCultureMedium/"



      CellCultureConditions : days_at_air_liquid_interface

      CellCultureConditions : donor_count

      CellCultureConditions : id

      CellCultureConditions : name

      CellCultureConditions : passage_number

      CellCultureConditions : replicates_per_donor

      CellCultureConditions : substrate_type





        CellCultureConditions --> "0..1" SubstrateTypeEnum : substrate_type
        click SubstrateTypeEnum href "../SubstrateTypeEnum/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
culture_media 0..1
CellCultureMedium		 direct
days_at_air_liquid_interface 0..1
Integer		 direct
passage_number 0..1
Integer		 direct
substrate_type 0..1
SubstrateTypeEnum		 direct
cell_culture_growth_mode 0..1
CellCultureGrowthModeEnum		 direct
donor_count 0..1
Integer		 direct
replicates_per_donor 0..1
Integer		 Number of biological replicates per donor direct
id 1
Uriorcurie		 A unique identifier for the entity NamedEntity
name 0..1
String		 A human-readable name for the entity NamedEntity

Usages

used by used in type used
CellularSystem culture_conditions range CellCultureConditions

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/soma

Mappings

Mapping Type Mapped Value
self soma:CellCultureConditions
native soma:CellCultureConditions
exact CLO:0037334

LinkML Source

Direct

name: CellCultureConditions
description: Detailed cell culture parameters including medium, environment, and timing.
from_schema: https://w3id.org/EHS-Data-Standards/soma
exact_mappings:
- CLO:0037334
is_a: NamedEntity
slots:
- culture_media
- days_at_air_liquid_interface
- passage_number
- substrate_type
- cell_culture_growth_mode
- donor_count
- replicates_per_donor

Induced

name: CellCultureConditions
description: Detailed cell culture parameters including medium, environment, and timing.
from_schema: https://w3id.org/EHS-Data-Standards/soma
exact_mappings:
- CLO:0037334
is_a: NamedEntity
attributes:
  culture_media:
    name: culture_media
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: culture_media
    owner: CellCultureConditions
    domain_of:
    - CellularSystem
    - CellCultureConditions
    range: CellCultureMedium
    inlined: true
  days_at_air_liquid_interface:
    name: days_at_air_liquid_interface
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: days_at_air_liquid_interface
    owner: CellCultureConditions
    domain_of:
    - CellCultureConditions
    range: integer
  passage_number:
    name: passage_number
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: passage_number
    owner: CellCultureConditions
    domain_of:
    - CellularSystem
    - CellCultureConditions
    range: integer
  substrate_type:
    name: substrate_type
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: substrate_type
    owner: CellCultureConditions
    domain_of:
    - CellularSystem
    - CellCultureConditions
    range: SubstrateTypeEnum
  cell_culture_growth_mode:
    name: cell_culture_growth_mode
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: cell_culture_growth_mode
    owner: CellCultureConditions
    domain_of:
    - CellularSystem
    - CellCultureConditions
    range: CellCultureGrowthModeEnum
  donor_count:
    name: donor_count
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: donor_count
    owner: CellCultureConditions
    domain_of:
    - CellCultureConditions
    range: integer
  replicates_per_donor:
    name: replicates_per_donor
    description: Number of biological replicates per donor.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: replicates_per_donor
    owner: CellCultureConditions
    domain_of:
    - CellularSystem
    - CellCultureConditions
    range: integer
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: CellCultureConditions
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: CellCultureConditions
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string