Skip to content

Class: CellCultureMedium

Detailed formulation of cell culture medium including base medium and supplements.

URI: soma:CellCultureMedium

 classDiagram
    class CellCultureMedium
    click CellCultureMedium href "../CellCultureMedium/"
      NamedEntity <|-- CellCultureMedium
        click NamedEntity href "../NamedEntity/"

      CellCultureMedium : base_medium

      CellCultureMedium : catalog_number

      CellCultureMedium : id

      CellCultureMedium : lot_number

      CellCultureMedium : manufacturer

      CellCultureMedium : name

      CellCultureMedium : osmolality





        CellCultureMedium --> "0..1" QuantityValue : osmolality
        click QuantityValue href "../QuantityValue/"



      CellCultureMedium : preparation_date

      CellCultureMedium : serum_concentration





        CellCultureMedium --> "0..1" QuantityValue : serum_concentration
        click QuantityValue href "../QuantityValue/"



      CellCultureMedium : serum_type

      CellCultureMedium : supplements





        CellCultureMedium --> "*" MediumSupplement : supplements
        click MediumSupplement href "../MediumSupplement/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
base_medium 0..1
String		 direct
serum_type 0..1
String		 direct
serum_concentration 0..1
QuantityValue		 direct
supplements *
MediumSupplement		 direct
osmolality 0..1
QuantityValue		 direct
manufacturer 0..1
String		 direct
catalog_number 0..1
String		 direct
lot_number 0..1
String		 direct
preparation_date 0..1
Date		 direct
id 1
Uriorcurie		 A unique identifier for the entity NamedEntity
name 0..1
String		 A human-readable name for the entity NamedEntity

Usages

used by used in type used
CellularSystem culture_media range CellCultureMedium
CellCultureConditions culture_media range CellCultureMedium

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/soma

Mappings

Mapping Type Mapped Value
self soma:CellCultureMedium
native soma:CellCultureMedium

LinkML Source

Direct

name: CellCultureMedium
description: Detailed formulation of cell culture medium including base medium and
  supplements.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: NamedEntity
slots:
- base_medium
- serum_type
- serum_concentration
- supplements
- osmolality
- manufacturer
- catalog_number
- lot_number
- preparation_date

Induced

name: CellCultureMedium
description: Detailed formulation of cell culture medium including base medium and
  supplements.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: NamedEntity
attributes:
  base_medium:
    name: base_medium
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: base_medium
    owner: CellCultureMedium
    domain_of:
    - CellCultureMedium
    range: string
  serum_type:
    name: serum_type
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: serum_type
    owner: CellCultureMedium
    domain_of:
    - CellCultureMedium
    range: string
  serum_concentration:
    name: serum_concentration
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: serum_concentration
    owner: CellCultureMedium
    domain_of:
    - CellCultureMedium
    range: QuantityValue
    inlined: true
  supplements:
    name: supplements
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: supplements
    owner: CellCultureMedium
    domain_of:
    - CellCultureMedium
    range: MediumSupplement
    multivalued: true
    inlined: true
    inlined_as_list: true
  osmolality:
    name: osmolality
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: osmolality
    owner: CellCultureMedium
    domain_of:
    - CellCultureMedium
    range: QuantityValue
    inlined: true
  manufacturer:
    name: manufacturer
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: manufacturer
    owner: CellCultureMedium
    domain_of:
    - CellCultureMedium
    - MediumSupplement
    range: string
  catalog_number:
    name: catalog_number
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: catalog_number
    owner: CellCultureMedium
    domain_of:
    - CellLine
    - CellCultureMedium
    - MediumSupplement
    range: string
  lot_number:
    name: lot_number
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: lot_number
    owner: CellCultureMedium
    domain_of:
    - CellCultureMedium
    range: string
  preparation_date:
    name: preparation_date
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: preparation_date
    owner: CellCultureMedium
    domain_of:
    - CellCultureMedium
    range: date
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: CellCultureMedium
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: CellCultureMedium
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string