Class: CellLine

A cell line - a genetically stable cultured cell population.

 classDiagram
    class CellLine
    click CellLine href "../CellLine/"
      NamedEntity <|-- CellLine
        click NamedEntity href "../NamedEntity/"

      CellLine : authentication_method

      CellLine : catalog_number

      CellLine : cell_type





        CellLine --> "0..1" CellTypeReference : cell_type
        click CellTypeReference href "../CellTypeReference/"



      CellLine : disease_state

      CellLine : id

      CellLine : model_species





        CellLine --> "0..1" SpeciesReference : model_species
        click SpeciesReference href "../SpeciesReference/"



      CellLine : mycoplasma_status

      CellLine : name

      CellLine : supplier

      CellLine : tissue_origin

Inheritance

NamedEntity
- CellLine

Slots

Name	Cardinality and Range	Description	Inheritance
cell_type	0..1 CellTypeReference	The cell type being studied	direct
model_species	0..1 SpeciesReference	The species of origin for the cells or organism being studied	direct
tissue_origin	0..1 String		direct
disease_state	0..1 String		direct
supplier	0..1 String		direct
catalog_number	0..1 String		direct
authentication_method	0..1 String		direct
mycoplasma_status	0..1 String		direct
id	1 Uriorcurie	A unique identifier for the entity	NamedEntity
name	0..1 String	A human-readable name for the entity	NamedEntity

Usages

used by	used in	type	used
CellularSystem	cell_line	range	CellLine

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

CLO

Schema Source

from schema: https://w3id.org/EHS-Data-Standards/soma

Mappings

Mapping Type	Mapped Value
self	soma:CellLine
native	soma:CellLine

LinkML Source

Direct

name: CellLine
id_prefixes:
- CLO
description: A cell line - a genetically stable cultured cell population.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: NamedEntity
slots:
- cell_type
- model_species
- tissue_origin
- disease_state
- supplier
- catalog_number
- authentication_method
- mycoplasma_status
slot_usage:
  id:
    name: id
    pattern: ^CLO:\d{7}$

Induced

name: CellLine
id_prefixes:
- CLO
description: A cell line - a genetically stable cultured cell population.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: NamedEntity
slot_usage:
  id:
    name: id
    pattern: ^CLO:\d{7}$
attributes:
  cell_type:
    name: cell_type
    description: The cell type being studied. Reference to a Cell Ontology (CL) term.
      Used on CellularSystem and CellLine to describe the cell identity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: EFO:0000324
    alias: cell_type
    owner: CellLine
    domain_of:
    - CellularSystem
    - CellLine
    range: CellTypeReference
    inlined: true
  model_species:
    name: model_species
    description: The species of origin for the cells or organism being studied. Reference
      to NCBITaxon term.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: model_species
    owner: CellLine
    domain_of:
    - StudySubject
    - CellLine
    range: SpeciesReference
    inlined: true
  tissue_origin:
    name: tissue_origin
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: tissue_origin
    owner: CellLine
    domain_of:
    - CellLine
    range: string
  disease_state:
    name: disease_state
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: disease_state
    owner: CellLine
    domain_of:
    - InVivoSubject
    - CellLine
    range: string
  supplier:
    name: supplier
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: supplier
    owner: CellLine
    domain_of:
    - CellLine
    range: string
  catalog_number:
    name: catalog_number
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: catalog_number
    owner: CellLine
    domain_of:
    - CellLine
    - CellCultureMedium
    - MediumSupplement
    range: string
  authentication_method:
    name: authentication_method
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: authentication_method
    owner: CellLine
    domain_of:
    - CellLine
    range: string
  mycoplasma_status:
    name: mycoplasma_status
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: mycoplasma_status
    owner: CellLine
    domain_of:
    - CellLine
    range: string
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: CellLine
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
    pattern: ^CLO:\d{7}$
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: CellLine
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string