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Class: CiliaryFunctionOutput

Measurement results from a ciliary function assay. Contains the measured values for ciliary beat frequency, active area, cilia morphology, and ciliated cell populations.

URI: soma:CiliaryFunctionOutput

 classDiagram
    class CiliaryFunctionOutput
    click CiliaryFunctionOutput href "../CiliaryFunctionOutput/"
      AssayOutputMeasurement <|-- CiliaryFunctionOutput
        click AssayOutputMeasurement href "../AssayOutputMeasurement/"

      CiliaryFunctionOutput : active_area_percentage





        CiliaryFunctionOutput --> "0..1" QuantityValue : active_area_percentage
        click QuantityValue href "../QuantityValue/"



      CiliaryFunctionOutput : beat_frequency_hz





        CiliaryFunctionOutput --> "0..1" QuantityValue : beat_frequency_hz
        click QuantityValue href "../QuantityValue/"



      CiliaryFunctionOutput : cell_type_ratios

      CiliaryFunctionOutput : cilia_length





        CiliaryFunctionOutput --> "0..1" QuantityValue : cilia_length
        click QuantityValue href "../QuantityValue/"



      CiliaryFunctionOutput : cilia_per_cell





        CiliaryFunctionOutput --> "0..1" QuantityValue : cilia_per_cell
        click QuantityValue href "../QuantityValue/"



      CiliaryFunctionOutput : ciliary_beat_amplitude





        CiliaryFunctionOutput --> "0..1" QuantityValue : ciliary_beat_amplitude
        click QuantityValue href "../QuantityValue/"



      CiliaryFunctionOutput : ciliary_motion_patterns





        CiliaryFunctionOutput --> "0..1" CiliaryMotionPatternEnum : ciliary_motion_patterns
        click CiliaryMotionPatternEnum href "../CiliaryMotionPatternEnum/"



      CiliaryFunctionOutput : description

      CiliaryFunctionOutput : id

      CiliaryFunctionOutput : name

      CiliaryFunctionOutput : percentage_ciliated_cells





        CiliaryFunctionOutput --> "0..1" QuantityValue : percentage_ciliated_cells
        click QuantityValue href "../QuantityValue/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
beat_frequency_hz 0..1
QuantityValue		 Ciliary beat frequency measured in Hz direct
active_area_percentage 0..1
QuantityValue		 Percentage of epithelial surface with actively beating cilia direct
cilia_length 0..1
QuantityValue		 Length of cilia measured in micrometers direct
cilia_per_cell 0..1
QuantityValue		 Number of cilia per ciliated cell direct
percentage_ciliated_cells 0..1
QuantityValue		 Percentage of cells that are ciliated direct
cell_type_ratios *
String		 direct
ciliary_motion_patterns 0..1
CiliaryMotionPatternEnum		 Patterns of ciliary motion (coordinated, dyskinetic, immotile) direct
ciliary_beat_amplitude 0..1
QuantityValue		 Amplitude of ciliary beat direct
id 1
Uriorcurie		 A unique identifier for the entity NamedThing
name 0..1
String		 A human-readable name for the entity NamedThing
description 0..1
String		 A detailed description of the entity NamedThing

Usages

used by used in type used
CiliaryFunctionAssay has_specified_output range CiliaryFunctionOutput

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/soma

Mappings

Mapping Type Mapped Value
self soma:CiliaryFunctionOutput
native soma:CiliaryFunctionOutput

LinkML Source

Direct

name: CiliaryFunctionOutput
description: Measurement results from a ciliary function assay. Contains the measured
  values for ciliary beat frequency, active area, cilia morphology, and ciliated cell
  populations.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
slots:
- beat_frequency_hz
- active_area_percentage
- cilia_length
- cilia_per_cell
- percentage_ciliated_cells
- cell_type_ratios
- ciliary_motion_patterns
- ciliary_beat_amplitude

Induced

name: CiliaryFunctionOutput
description: Measurement results from a ciliary function assay. Contains the measured
  values for ciliary beat frequency, active area, cilia morphology, and ciliated cell
  populations.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
attributes:
  beat_frequency_hz:
    name: beat_frequency_hz
    description: Ciliary beat frequency measured in Hz. TIER 1 - critical for assessing
      ciliary function.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: beat_frequency_hz
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: QuantityValue
    inlined: true
  active_area_percentage:
    name: active_area_percentage
    description: Percentage of epithelial surface with actively beating cilia. TIER
      1 - critical for assessing ciliary coverage.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: active_area_percentage
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: QuantityValue
    inlined: true
  cilia_length:
    name: cilia_length
    description: Length of cilia measured in micrometers. TIER 1 - morphological assessment
      of cilia.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: cilia_length
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: QuantityValue
    inlined: true
  cilia_per_cell:
    name: cilia_per_cell
    description: Number of cilia per ciliated cell. TIER 1.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: cilia_per_cell
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: QuantityValue
    inlined: true
  percentage_ciliated_cells:
    name: percentage_ciliated_cells
    description: Percentage of cells that are ciliated. TIER 1 - critical for understanding
      ciliated cell populations.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: percentage_ciliated_cells
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: QuantityValue
    inlined: true
  cell_type_ratios:
    name: cell_type_ratios
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: cell_type_ratios
    owner: CiliaryFunctionOutput
    domain_of:
    - CellularSystem
    - CiliaryFunctionOutput
    range: string
    multivalued: true
  ciliary_motion_patterns:
    name: ciliary_motion_patterns
    description: Patterns of ciliary motion (coordinated, dyskinetic, immotile). TIER
      2 - supporting information.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: ciliary_motion_patterns
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: CiliaryMotionPatternEnum
  ciliary_beat_amplitude:
    name: ciliary_beat_amplitude
    description: Amplitude of ciliary beat. TIER 2.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: ciliary_beat_amplitude
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: QuantityValue
    inlined: true
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: CiliaryFunctionOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: CiliaryFunctionOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string
  description:
    name: description
    description: A detailed description of the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: CiliaryFunctionOutput
    domain_of:
    - NamedThing
    range: string