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Class: FoxJExpressionOutput

Measurement results from a FoxJ1 expression assay. Contains the measured values for FoxJ1 mRNA, protein, and cellular localization.

URI: soma:FoxJExpressionOutput

 classDiagram
    class FoxJExpressionOutput
    click FoxJExpressionOutput href "../FoxJExpressionOutput/"
      AssayOutputMeasurement <|-- FoxJExpressionOutput
        click AssayOutputMeasurement href "../AssayOutputMeasurement/"

      FoxJExpressionOutput : description

      FoxJExpressionOutput : foxj1_mrna_expression





        FoxJExpressionOutput --> "0..1" QuantityValue : foxj1_mrna_expression
        click QuantityValue href "../QuantityValue/"



      FoxJExpressionOutput : foxj1_nuclear_localization





        FoxJExpressionOutput --> "0..1" QuantityValue : foxj1_nuclear_localization
        click QuantityValue href "../QuantityValue/"



      FoxJExpressionOutput : foxj1_positive_cell_percentage





        FoxJExpressionOutput --> "0..1" QuantityValue : foxj1_positive_cell_percentage
        click QuantityValue href "../QuantityValue/"



      FoxJExpressionOutput : foxj1_protein_expression





        FoxJExpressionOutput --> "0..1" QuantityValue : foxj1_protein_expression
        click QuantityValue href "../QuantityValue/"



      FoxJExpressionOutput : id

      FoxJExpressionOutput : name

Inheritance

Slots

Name Cardinality and Range Description Inheritance
foxj1_mrna_expression 0..1
QuantityValue		 FoxJ1 mRNA expression level direct
foxj1_protein_expression 0..1
QuantityValue		 FoxJ1 protein expression level direct
foxj1_positive_cell_percentage 0..1
QuantityValue		 Percentage of FoxJ1-positive cells direct
foxj1_nuclear_localization 0..1
QuantityValue		 FoxJ1 nuclear localization direct
id 1
Uriorcurie		 A unique identifier for the entity NamedThing
name 0..1
String		 A human-readable name for the entity NamedThing
description 0..1
String		 A detailed description of the entity NamedThing

Usages

used by used in type used
FoxJExpressionAssay has_specified_output range FoxJExpressionOutput

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/soma

Mappings

Mapping Type Mapped Value
self soma:FoxJExpressionOutput
native soma:FoxJExpressionOutput

LinkML Source

Direct

name: FoxJExpressionOutput
description: Measurement results from a FoxJ1 expression assay. Contains the measured
  values for FoxJ1 mRNA, protein, and cellular localization.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
slots:
- foxj1_mrna_expression
- foxj1_protein_expression
- foxj1_positive_cell_percentage
- foxj1_nuclear_localization

Induced

name: FoxJExpressionOutput
description: Measurement results from a FoxJ1 expression assay. Contains the measured
  values for FoxJ1 mRNA, protein, and cellular localization.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
attributes:
  foxj1_mrna_expression:
    name: foxj1_mrna_expression
    description: FoxJ1 mRNA expression level.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: foxj1_mrna_expression
    owner: FoxJExpressionOutput
    domain_of:
    - FoxJExpressionOutput
    range: QuantityValue
    inlined: true
  foxj1_protein_expression:
    name: foxj1_protein_expression
    description: FoxJ1 protein expression level.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: foxj1_protein_expression
    owner: FoxJExpressionOutput
    domain_of:
    - FoxJExpressionOutput
    range: QuantityValue
    inlined: true
  foxj1_positive_cell_percentage:
    name: foxj1_positive_cell_percentage
    description: Percentage of FoxJ1-positive cells.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: foxj1_positive_cell_percentage
    owner: FoxJExpressionOutput
    domain_of:
    - FoxJExpressionOutput
    range: QuantityValue
    inlined: true
  foxj1_nuclear_localization:
    name: foxj1_nuclear_localization
    description: FoxJ1 nuclear localization.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: foxj1_nuclear_localization
    owner: FoxJExpressionOutput
    domain_of:
    - FoxJExpressionOutput
    range: QuantityValue
    inlined: true
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: FoxJExpressionOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: FoxJExpressionOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string
  description:
    name: description
    description: A detailed description of the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: FoxJExpressionOutput
    domain_of:
    - NamedThing
    range: string