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Class: LungFunctionOutput

Measurement results from a lung function assay. Contains spirometry measurements, diffusing capacity, and related clinical metrics.

URI: soma:LungFunctionOutput

 classDiagram
    class LungFunctionOutput
    click LungFunctionOutput href "../LungFunctionOutput/"
      AssayOutputMeasurement <|-- LungFunctionOutput
        click AssayOutputMeasurement href "../AssayOutputMeasurement/"

      LungFunctionOutput : bronchodilator_response





        LungFunctionOutput --> "0..1" QuantityValue : bronchodilator_response
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : decline_rate





        LungFunctionOutput --> "0..1" QuantityValue : decline_rate
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : description

      LungFunctionOutput : dlco





        LungFunctionOutput --> "0..1" QuantityValue : dlco
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : fef25_75





        LungFunctionOutput --> "0..1" QuantityValue : fef25_75
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : feno





        LungFunctionOutput --> "0..1" QuantityValue : feno
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : fev1





        LungFunctionOutput --> "0..1" QuantityValue : fev1
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : fev1_fvc_ratio





        LungFunctionOutput --> "0..1" QuantityValue : fev1_fvc_ratio
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : functional_residual_capacity





        LungFunctionOutput --> "0..1" QuantityValue : functional_residual_capacity
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : fvc





        LungFunctionOutput --> "0..1" QuantityValue : fvc
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : id

      LungFunctionOutput : lung_compliance





        LungFunctionOutput --> "0..1" QuantityValue : lung_compliance
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : lung_elastance





        LungFunctionOutput --> "0..1" QuantityValue : lung_elastance
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : lung_resistance





        LungFunctionOutput --> "0..1" QuantityValue : lung_resistance
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : name

      LungFunctionOutput : peak_expiratory_flow





        LungFunctionOutput --> "0..1" QuantityValue : peak_expiratory_flow
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : residual_volume





        LungFunctionOutput --> "0..1" QuantityValue : residual_volume
        click QuantityValue href "../QuantityValue/"



      LungFunctionOutput : total_lung_capacity





        LungFunctionOutput --> "0..1" QuantityValue : total_lung_capacity
        click QuantityValue href "../QuantityValue/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
fev1 0..1
QuantityValue		 Forced expiratory volume in 1 second direct
fvc 0..1
QuantityValue		 Forced vital capacity direct
fev1_fvc_ratio 0..1
QuantityValue		 Ratio of FEV1 to FVC (Tiffeneau-Pinelli index) direct
feno 0..1
QuantityValue		 Fractional exhaled nitric oxide in ppb direct
decline_rate 0..1
QuantityValue		 Longitudinal decline rate in mL/year direct
bronchodilator_response 0..1
QuantityValue		 Response to bronchodilator (% change in FEV1) direct
dlco 0..1
QuantityValue		 Diffusing capacity for carbon monoxide direct
peak_expiratory_flow 0..1
QuantityValue		 Peak expiratory flow direct
fef25_75 0..1
QuantityValue		 Forced expiratory flow 25-75% direct
total_lung_capacity 0..1
QuantityValue		 Total lung capacity direct
functional_residual_capacity 0..1
QuantityValue		 Functional residual capacity direct
residual_volume 0..1
QuantityValue		 Residual volume direct
lung_compliance 0..1
QuantityValue		 Lung compliance direct
lung_elastance 0..1
QuantityValue		 Lung elastance direct
lung_resistance 0..1
QuantityValue		 Lung resistance direct
id 1
Uriorcurie		 A unique identifier for the entity NamedThing
name 0..1
String		 A human-readable name for the entity NamedThing
description 0..1
String		 A detailed description of the entity NamedThing

Usages

used by used in type used
LungFunctionAssay has_specified_output range LungFunctionOutput

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/soma

Mappings

Mapping Type Mapped Value
self soma:LungFunctionOutput
native soma:LungFunctionOutput

LinkML Source

Direct

name: LungFunctionOutput
description: Measurement results from a lung function assay. Contains spirometry measurements,
  diffusing capacity, and related clinical metrics.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
slots:
- fev1
- fvc
- fev1_fvc_ratio
- feno
- decline_rate
- bronchodilator_response
- dlco
- peak_expiratory_flow
- fef25_75
- total_lung_capacity
- functional_residual_capacity
- residual_volume
- lung_compliance
- lung_elastance
- lung_resistance

Induced

name: LungFunctionOutput
description: Measurement results from a lung function assay. Contains spirometry measurements,
  diffusing capacity, and related clinical metrics.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
attributes:
  fev1:
    name: fev1
    description: Forced expiratory volume in 1 second. TIER 1 - primary spirometry
      measurement.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: fev1
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  fvc:
    name: fvc
    description: Forced vital capacity. TIER 1 - primary spirometry measurement.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: fvc
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  fev1_fvc_ratio:
    name: fev1_fvc_ratio
    description: Ratio of FEV1 to FVC (Tiffeneau-Pinelli index). TIER 2 - can be calculated
      from FEV1 and FVC.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: fev1_fvc_ratio
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  feno:
    name: feno
    description: Fractional exhaled nitric oxide in ppb. TIER 2 - marker for airway
      inflammation.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: feno
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  decline_rate:
    name: decline_rate
    description: Longitudinal decline rate in mL/year. TIER 2 - useful for pre/post
      comparisons.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: decline_rate
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  bronchodilator_response:
    name: bronchodilator_response
    description: Response to bronchodilator (% change in FEV1). TIER 2 - informs reversibility.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: bronchodilator_response
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  dlco:
    name: dlco
    description: Diffusing capacity for carbon monoxide. TIER 2 - measure of fibrosis,
      needs hemoglobin level.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: dlco
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  peak_expiratory_flow:
    name: peak_expiratory_flow
    description: Peak expiratory flow. TIER 2.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: peak_expiratory_flow
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  fef25_75:
    name: fef25_75
    description: Forced expiratory flow 25-75%. TIER 3 - more variable than FEV1,
      FVC.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: fef25_75
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  total_lung_capacity:
    name: total_lung_capacity
    description: Total lung capacity. TIER 3 - requires more equipment.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: total_lung_capacity
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  functional_residual_capacity:
    name: functional_residual_capacity
    description: Functional residual capacity. TIER 3 - requires more equipment.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: functional_residual_capacity
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  residual_volume:
    name: residual_volume
    description: Residual volume. TIER 3 - requires more equipment.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: residual_volume
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  lung_compliance:
    name: lung_compliance
    description: Lung compliance. TIER 3 - most often reported for animals, difficult
      to relate to human exposure.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: lung_compliance
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  lung_elastance:
    name: lung_elastance
    description: Lung elastance. TIER 3 - most often reported for animals.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: lung_elastance
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  lung_resistance:
    name: lung_resistance
    description: Lung resistance. TIER 3 - most often reported for animals.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: lung_resistance
    owner: LungFunctionOutput
    domain_of:
    - LungFunctionOutput
    range: QuantityValue
    inlined: true
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: LungFunctionOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: LungFunctionOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string
  description:
    name: description
    description: A detailed description of the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: LungFunctionOutput
    domain_of:
    - NamedThing
    range: string