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Class: ModelSystem

An in vitro or ex vivo model system used to study biological processes. Parent class for cell-based and other model systems.

URI: soma:ModelSystem

 classDiagram
    class ModelSystem
    click ModelSystem href "../ModelSystem/"
      StudySubject <|-- ModelSystem
        click StudySubject href "../StudySubject/"


      ModelSystem <|-- CellularSystem
        click CellularSystem href "../CellularSystem/"


      ModelSystem : description

      ModelSystem : id

      ModelSystem : model_species





        ModelSystem --> "0..1" SpeciesReference : model_species
        click SpeciesReference href "../SpeciesReference/"



      ModelSystem : name

      ModelSystem : subject_type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject_type 0..1
String		 The specific type of study subject StudySubject
model_species 0..1
SpeciesReference		 The species of origin for the cells or organism being studied StudySubject
id 1
Uriorcurie		 A unique identifier for the entity NamedThing
name 0..1
String		 A human-readable name for the entity NamedThing
description 0..1
String		 A detailed description of the entity NamedThing

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/soma

Mappings

Mapping Type Mapped Value
self soma:ModelSystem
native soma:ModelSystem

LinkML Source

Direct

name: ModelSystem
description: An in vitro or ex vivo model system used to study biological processes.
  Parent class for cell-based and other model systems.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: StudySubject

Induced

name: ModelSystem
description: An in vitro or ex vivo model system used to study biological processes.
  Parent class for cell-based and other model systems.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: StudySubject
attributes:
  subject_type:
    name: subject_type
    description: The specific type of study subject. Used to designate which concrete
      class (e.g., CellularSystem, InVivoSubject) is instantiated for polymorphic
      study_subject slots.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    designates_type: true
    alias: subject_type
    owner: ModelSystem
    domain_of:
    - StudySubject
    range: string
  model_species:
    name: model_species
    description: The species of origin for the cells or organism being studied. Reference
      to NCBITaxon term.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: model_species
    owner: ModelSystem
    domain_of:
    - StudySubject
    - CellLine
    range: SpeciesReference
    inlined: true
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: ModelSystem
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: ModelSystem
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string
  description:
    name: description
    description: A detailed description of the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: ModelSystem
    domain_of:
    - NamedThing
    range: string