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Class: MucociliaryClearanceOutput

Measurement results from a mucociliary clearance assay. Contains the measured values for transport rate, directionality, and clearance metrics.

URI: soma:MucociliaryClearanceOutput

 classDiagram
    class MucociliaryClearanceOutput
    click MucociliaryClearanceOutput href "../MucociliaryClearanceOutput/"
      AssayOutputMeasurement <|-- MucociliaryClearanceOutput
        click AssayOutputMeasurement href "../AssayOutputMeasurement/"

      MucociliaryClearanceOutput : description

      MucociliaryClearanceOutput : id

      MucociliaryClearanceOutput : mucus_layer_thickness





        MucociliaryClearanceOutput --> "0..1" QuantityValue : mucus_layer_thickness
        click QuantityValue href "../QuantityValue/"



      MucociliaryClearanceOutput : name

      MucociliaryClearanceOutput : particle_clearance_time





        MucociliaryClearanceOutput --> "0..1" QuantityValue : particle_clearance_time
        click QuantityValue href "../QuantityValue/"



      MucociliaryClearanceOutput : percentage_active_transport





        MucociliaryClearanceOutput --> "0..1" QuantityValue : percentage_active_transport
        click QuantityValue href "../QuantityValue/"



      MucociliaryClearanceOutput : transport_directionality





        MucociliaryClearanceOutput --> "0..1" DirectionalityEnum : transport_directionality
        click DirectionalityEnum href "../DirectionalityEnum/"



      MucociliaryClearanceOutput : transport_rate





        MucociliaryClearanceOutput --> "0..1" QuantityValue : transport_rate
        click QuantityValue href "../QuantityValue/"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
transport_rate 0..1
QuantityValue		 Mucociliary transport rate direct
transport_directionality 0..1
DirectionalityEnum		 Directionality of mucociliary transport direct
mucus_layer_thickness 0..1
QuantityValue		 Thickness of the mucus gel layer in micrometers direct
percentage_active_transport 0..1
QuantityValue		 Percentage of area showing active transport direct
particle_clearance_time 0..1
QuantityValue		 Time for particle clearance direct
id 1
Uriorcurie		 A unique identifier for the entity NamedThing
name 0..1
String		 A human-readable name for the entity NamedThing
description 0..1
String		 A detailed description of the entity NamedThing

Usages

used by used in type used
MucociliaryClearanceAssay has_specified_output range MucociliaryClearanceOutput

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/soma

Mappings

Mapping Type Mapped Value
self soma:MucociliaryClearanceOutput
native soma:MucociliaryClearanceOutput

LinkML Source

Direct

name: MucociliaryClearanceOutput
description: Measurement results from a mucociliary clearance assay. Contains the
  measured values for transport rate, directionality, and clearance metrics.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
slots:
- transport_rate
- transport_directionality
- mucus_layer_thickness
- percentage_active_transport
- particle_clearance_time

Induced

name: MucociliaryClearanceOutput
description: Measurement results from a mucociliary clearance assay. Contains the
  measured values for transport rate, directionality, and clearance metrics.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
attributes:
  transport_rate:
    name: transport_rate
    description: Mucociliary transport rate. TIER 1 - primary outcome measure for
      MCC assays.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: transport_rate
    owner: MucociliaryClearanceOutput
    domain_of:
    - MucociliaryClearanceOutput
    range: QuantityValue
    inlined: true
  transport_directionality:
    name: transport_directionality
    description: Directionality of mucociliary transport. TIER 1.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: transport_directionality
    owner: MucociliaryClearanceOutput
    domain_of:
    - MucociliaryClearanceOutput
    range: DirectionalityEnum
  mucus_layer_thickness:
    name: mucus_layer_thickness
    description: Thickness of the mucus gel layer in micrometers. TIER 2.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: mucus_layer_thickness
    owner: MucociliaryClearanceOutput
    domain_of:
    - ASLOutput
    - MucociliaryClearanceOutput
    range: QuantityValue
    inlined: true
  percentage_active_transport:
    name: percentage_active_transport
    description: Percentage of area showing active transport. TIER 2.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: percentage_active_transport
    owner: MucociliaryClearanceOutput
    domain_of:
    - MucociliaryClearanceOutput
    range: QuantityValue
    inlined: true
  particle_clearance_time:
    name: particle_clearance_time
    description: Time for particle clearance. TIER 2.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: particle_clearance_time
    owner: MucociliaryClearanceOutput
    domain_of:
    - MucociliaryClearanceOutput
    range: QuantityValue
    inlined: true
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: MucociliaryClearanceOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: MucociliaryClearanceOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string
  description:
    name: description
    description: A detailed description of the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: MucociliaryClearanceOutput
    domain_of:
    - NamedThing
    range: string