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Class: SpeciesReference

A reference to a species from the NCBI Taxonomy.

URI: soma:SpeciesReference

 classDiagram
    class SpeciesReference
    click SpeciesReference href "../SpeciesReference/"
      NamedEntity <|-- SpeciesReference
        click NamedEntity href "../NamedEntity/"

      SpeciesReference : id

      SpeciesReference : name

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1
Uriorcurie		 A unique identifier for the entity NamedEntity
name 0..1
String		 A human-readable name for the entity NamedEntity

Usages

used by used in type used
StudySubject model_species range SpeciesReference
ModelSystem model_species range SpeciesReference
InVivoSubject model_species range SpeciesReference
PopulationSubject model_species range SpeciesReference
CellularSystem model_species range SpeciesReference
CellLine model_species range SpeciesReference

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • NCBITaxon

Schema Source

  • from schema: https://w3id.org/EHS-Data-Standards/soma

Mappings

Mapping Type Mapped Value
self soma:SpeciesReference
native soma:SpeciesReference

LinkML Source

Direct

name: SpeciesReference
id_prefixes:
- NCBITaxon
description: A reference to a species from the NCBI Taxonomy.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: NamedEntity
slot_usage:
  id:
    name: id
    pattern: ^NCBITaxon:\d+$

Induced

name: SpeciesReference
id_prefixes:
- NCBITaxon
description: A reference to a species from the NCBI Taxonomy.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: NamedEntity
slot_usage:
  id:
    name: id
    pattern: ^NCBITaxon:\d+$
attributes:
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: SpeciesReference
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
    pattern: ^NCBITaxon:\d+$
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: SpeciesReference
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string