Effective-component compatibility of Bufei Yishen formula protects COPD rats against PM2.5-induced oxidative stress via miR-155/FOXO3a pathway.

Homo sapiensMus musculusRattus norvegicus N-acetyl-L-cysteinefine respirable suspended particulate matter

Study subjects

SUBJECT:li-rat-copd-pm25

PM2.5-aggravated COPD Sprague-Dawley rat

type: InVivoSubject Rattus norvegicus NCBITaxon:10116 sex: male age:  week (range 6 to 9)

32 male SD rats, 6-9 weeks old, randomized into four groups (n = 8): Control, Model (PM2.5-aggravated COPD), ECC-BYF, NAC. COPD induced over 8 weeks by twice-daily cigarette smoke inhalation (30 min each) plus intranasal Klebsiella pneumoniae every five days, then 8 weeks of whole-body concentrated PM2.5 exposure.

Pulmonary function measured every fourth week to week 16 (noninvasive) and at week 17 (invasive)

SUBJECT:li-rat-copd-pm25-lung

PM2.5-aggravated COPD Sprague-Dawley rat - lung tissue

type: InVivoSubject Rattus norvegicus NCBITaxon:10116 sex: male

32 male SD rats, 6-9 weeks old, randomized into four groups (n = 8): Control, Model (PM2.5-aggravated COPD), ECC-BYF, NAC. COPD induced over 8 weeks by twice-daily cigarette smoke inhalation (30 min each) plus intranasal Klebsiella pneumoniae every five days, then 8 weeks of whole-body concentrated PM2.5 exposure.

SUBJECT:li-rat-copd-pm25-serum

PM2.5-aggravated COPD Sprague-Dawley rat - serum

type: InVivoSubject Rattus norvegicus NCBITaxon:10116 sex: male

32 male SD rats, 6-9 weeks old, randomized into four groups (n = 8): Control, Model (PM2.5-aggravated COPD), ECC-BYF, NAC. COPD induced over 8 weeks by twice-daily cigarette smoke inhalation (30 min each) plus intranasal Klebsiella pneumoniae every five days, then 8 weeks of whole-body concentrated PM2.5 exposure.

SUBJECT:li-rat-copd-pm25-balf

PM2.5-aggravated COPD Sprague-Dawley rat - BALF

type: InVivoSubject Rattus norvegicus NCBITaxon:10116 sex: male

32 male SD rats, 6-9 weeks old, randomized into four groups (n = 8): Control, Model (PM2.5-aggravated COPD), ECC-BYF, NAC. COPD induced over 8 weeks by twice-daily cigarette smoke inhalation (30 min each) plus intranasal Klebsiella pneumoniae every five days, then 8 weeks of whole-body concentrated PM2.5 exposure.

soma:li-beas2b-001

Beas-2B human bronchial epithelial cell line

type: CellularSystem Homo sapiens NCBITaxon:9606 bronchial epithelial cell CL:0002328
soma:li-mtec-001

Primary mouse tracheal epithelial cells at air-liquid interface

type: CellularSystem Mus musculus NCBITaxon:10090 tracheal epithelial cell CL:0000307

Lung function assays

LF:li-rat-pm25-copd

Pulmonary function in PM2.5-aggravated COPD rats with ECC-BYF or NAC

Noninvasive (VT, PEF, EF50) and invasive (FVC, FEV0.3, FEV0.3/FVC) pulmonary function in four rat groups. VT, PEF and EF50 decreased continuously from week 1 to week 16 in the model group; all six parameters were significantly lower in the model group than in the healthy control at week 17 (P < 0.01), indicating irreversible airflow limitation. ECC-BYF and NAC administration significantly increased all six parameters relative to the model group (P < 0.01). n = 8 per group. Values are reported only in Fig. 1b-g, so no numeric measurements are recorded here.

reference dataset: no reference dataset - rat model, group comparisons only

Exposure conditions

ConditionAgentConcentrationDuration
Filtered air (PM2.5 < 10 ug/m3) with distilled water gavage, healthy control rats
EXPOSURE:li-rat-filtered-air
— — 8 week
Concentrated ambient PM2.5, 4 h/day for 8 weeks, in rats with pre-existing COPD
EXPOSURE:li-rat-pm25-8wk
fine respirable suspended particulate matter
ENVO:01000415
739.97 microgram per cubic meter 8 week
ECC-BYF 5.5 mg/kg/d by gavage before daily PM2.5 exposure, 8 weeks
EXPOSURE:li-rat-eccbyf-pm25-8wk
— 5.5 milligram per kilogram per day 8 week
N-acetylcysteine 108 mg/kg/d by gavage before daily PM2.5 exposure, 8 weeks
EXPOSURE:li-rat-nac-pm25-8wk
N-acetyl-L-cysteine
CHEBI:28939
108 milligram per kilogram per day 8 week

Outputs

GroupOutputDescription
control Healthy control rats - pulmonary function
LF:li-rat-pm25-copd-output-control · under EXPOSURE:li-rat-filtered-air
Reference group. VT, PEF, EF50, FVC, FEV0.3 and FEV0.3/FVC all higher than the model group (P < 0.01). Figure-only values; none recorded.
treated PM2.5-aggravated COPD rats - pulmonary function
LF:li-rat-pm25-copd-output-model · under EXPOSURE:li-rat-pm25-8wk
All six parameters significantly decreased versus healthy control (P < 0.01). Figure-only values; none recorded.
treated ECC-BYF-treated PM2.5-aggravated COPD rats - pulmonary function
LF:li-rat-pm25-copd-output-eccbyf · under EXPOSURE:li-rat-eccbyf-pm25-8wk
All six parameters significantly increased versus the model group (P < 0.01). Figure-only values; none recorded.
treated NAC-treated PM2.5-aggravated COPD rats - pulmonary function
LF:li-rat-pm25-copd-output-nac · under EXPOSURE:li-rat-nac-pm25-8wk
Positive-comparator group; FVC, FEV0.3 and FEV0.3/FVC increased versus the model group. Figure-only values; none recorded.

Evidence

As expected, PM2.5-aggravated COPD rats showed a reduction of lung function, persistent lung inflammation, and remodeling of lung tissue.
SUPPORT MODEL ORGANISM PMID:34773846

States the model-group result this assay records: lung function fell in PM2.5-aggravated COPD rats relative to healthy controls.

In comparison, ECC-BYF administration significantly enhanced lung function, alleviated alveolar destruction, inflammatory cell infiltration, mucus hypersecretion, and collagen deposition, along with diminishing inflammatory cytokine production and oxidative stress.
SUPPORT MODEL ORGANISM PMID:34773846

States the treated-group result this assay records: ECC-BYF significantly improved lung function relative to the PM2.5-aggravated COPD model group.

Goblet cell assays

GCM:li-rat-he-goblet

Goblet cell hyperplasia in rat airway epithelium (H&E)

Qualitative histology. H&E-stained lung sections from model rats showed interalveolar septa thickening, numerous inflammatory cell infiltration, narrowed airway lumen and goblet cell hyperplasia in the airway epithelium; ECC-BYF- and NAC-treated rats appeared more or less similar to control. Goblet cells were identified by arrow annotation in Fig. 2b and were not counted, so no goblet cell percentage or count is recorded.

Exposure conditions

ConditionAgentConcentrationDuration
Filtered air (PM2.5 < 10 ug/m3) with distilled water gavage, healthy control rats
EXPOSURE:li-rat-filtered-air
— — 8 week
Concentrated ambient PM2.5, 4 h/day for 8 weeks, in rats with pre-existing COPD
EXPOSURE:li-rat-pm25-8wk
fine respirable suspended particulate matter
ENVO:01000415
739.97 microgram per cubic meter 8 week
ECC-BYF 5.5 mg/kg/d by gavage before daily PM2.5 exposure, 8 weeks
EXPOSURE:li-rat-eccbyf-pm25-8wk
— 5.5 milligram per kilogram per day 8 week

Outputs

GroupOutputDescription
control Healthy control rats - airway epithelium histology
GCM:li-rat-he-goblet-output-control · under EXPOSURE:li-rat-filtered-air
Normal airway epithelium; goblet cell hyperplasia not described. Qualitative only.
treated PM2.5-aggravated COPD rats - airway epithelium histology
GCM:li-rat-he-goblet-output-model · under EXPOSURE:li-rat-pm25-8wk
Goblet cell hyperplasia in the airway epithelium, with narrowed airway lumen and inflammatory cell infiltration. Qualitative only.
treated ECC-BYF-treated rats - airway epithelium histology
GCM:li-rat-he-goblet-output-eccbyf · under EXPOSURE:li-rat-eccbyf-pm25-8wk
Histopathological changes ameliorated and more or less similar to control, including mucus hypersecretion. Qualitative only.

Evidence

In comparison, ECC-BYF administration significantly enhanced lung function, alleviated alveolar destruction, inflammatory cell infiltration, mucus hypersecretion, and collagen deposition, along with diminishing inflammatory cytokine production and oxidative stress.
SUPPORT MODEL ORGANISM PMID:34773846

States that mucus hypersecretion was present in the PM2.5-aggravated COPD model and was alleviated by ECC-BYF, which is the airway secretory change this histology assay records.

Oxidative stress assays

OX:li-rat-serum

T-SOD and MDA in serum of PM2.5-aggravated COPD rats

Total superoxide dismutase (T-SOD, antioxidant) and malondialdehyde (MDA, oxidant) measured in rat serum by kit assay. T-SOD significantly decreased and MDA increased in the model group versus control (P < 0.01), indicating an oxidant/antioxidant imbalance. ECC-BYF and NAC reversed the imbalance; serum T-SOD was significantly higher and MDA significantly lower in ECC-BYF-treated than in NAC-treated rats (P < 0.01). Values reported only in Fig. 3a-b; none recorded.

Exposure conditions

ConditionAgentConcentrationDuration
Filtered air (PM2.5 < 10 ug/m3) with distilled water gavage, healthy control rats
EXPOSURE:li-rat-filtered-air
— — 8 week
Concentrated ambient PM2.5, 4 h/day for 8 weeks, in rats with pre-existing COPD
EXPOSURE:li-rat-pm25-8wk
fine respirable suspended particulate matter
ENVO:01000415
739.97 microgram per cubic meter 8 week
ECC-BYF 5.5 mg/kg/d by gavage before daily PM2.5 exposure, 8 weeks
EXPOSURE:li-rat-eccbyf-pm25-8wk
— 5.5 milligram per kilogram per day 8 week
N-acetylcysteine 108 mg/kg/d by gavage before daily PM2.5 exposure, 8 weeks
EXPOSURE:li-rat-nac-pm25-8wk
N-acetyl-L-cysteine
CHEBI:28939
108 milligram per kilogram per day 8 week

Outputs

GroupOutputDescription
control Healthy control rats - serum T-SOD and MDA
OX:li-rat-serum-output-control · under EXPOSURE:li-rat-filtered-air
Reference group. Figure-only values; none recorded.
treated PM2.5-aggravated COPD rats - serum T-SOD and MDA
OX:li-rat-serum-output-model · under EXPOSURE:li-rat-pm25-8wk
T-SOD significantly decreased and MDA significantly increased versus control (P < 0.01). Figure-only values; none recorded.
treated ECC-BYF-treated rats - serum T-SOD and MDA
OX:li-rat-serum-output-eccbyf · under EXPOSURE:li-rat-eccbyf-pm25-8wk
T-SOD elevated and MDA diminished versus the model group (P < 0.01), and significantly better than the NAC group (P < 0.01). Figure-only values; none recorded.
treated NAC-treated rats - serum T-SOD and MDA
OX:li-rat-serum-output-nac · under EXPOSURE:li-rat-nac-pm25-8wk
T-SOD elevated and MDA diminished versus the model group. Figure-only values; none recorded.

Evidence

In comparison, ECC-BYF administration significantly enhanced lung function, alleviated alveolar destruction, inflammatory cell infiltration, mucus hypersecretion, and collagen deposition, along with diminishing inflammatory cytokine production and oxidative stress.
SUPPORT MODEL ORGANISM PMID:34773846

States that ECC-BYF reduced oxidative stress in the PM2.5-aggravated COPD rats, which is what the serum T-SOD and MDA records in this assay show.

OX:li-rat-balf

T-SOD and MDA in bronchoalveolar lavage fluid of PM2.5-aggravated COPD rats

T-SOD and MDA measured in rat BALF by kit assay. The same oxidant/antioxidant imbalance seen in serum was present in BALF: T-SOD decreased and MDA increased in the model group versus control, and ECC-BYF and NAC reversed the imbalance. Values reported only in Fig. 3a-b; none recorded.

Exposure conditions

ConditionAgentConcentrationDuration
Filtered air (PM2.5 < 10 ug/m3) with distilled water gavage, healthy control rats
EXPOSURE:li-rat-filtered-air
— — 8 week
Concentrated ambient PM2.5, 4 h/day for 8 weeks, in rats with pre-existing COPD
EXPOSURE:li-rat-pm25-8wk
fine respirable suspended particulate matter
ENVO:01000415
739.97 microgram per cubic meter 8 week
ECC-BYF 5.5 mg/kg/d by gavage before daily PM2.5 exposure, 8 weeks
EXPOSURE:li-rat-eccbyf-pm25-8wk
— 5.5 milligram per kilogram per day 8 week
N-acetylcysteine 108 mg/kg/d by gavage before daily PM2.5 exposure, 8 weeks
EXPOSURE:li-rat-nac-pm25-8wk
N-acetyl-L-cysteine
CHEBI:28939
108 milligram per kilogram per day 8 week

Outputs

GroupOutputDescription
control Healthy control rats - BALF T-SOD and MDA
OX:li-rat-balf-output-control · under EXPOSURE:li-rat-filtered-air
Reference group. Figure-only values; none recorded.
treated PM2.5-aggravated COPD rats - BALF T-SOD and MDA
OX:li-rat-balf-output-model · under EXPOSURE:li-rat-pm25-8wk
T-SOD decreased and MDA increased versus control. Figure-only values; none recorded.
treated ECC-BYF-treated rats - BALF T-SOD and MDA
OX:li-rat-balf-output-eccbyf · under EXPOSURE:li-rat-eccbyf-pm25-8wk
T-SOD elevated and MDA diminished versus the model group. Figure-only values; none recorded.
treated NAC-treated rats - BALF T-SOD and MDA
OX:li-rat-balf-output-nac · under EXPOSURE:li-rat-nac-pm25-8wk
T-SOD elevated and MDA diminished versus the model group. Figure-only values; none recorded.

Evidence

In comparison, ECC-BYF administration significantly enhanced lung function, alleviated alveolar destruction, inflammatory cell infiltration, mucus hypersecretion, and collagen deposition, along with diminishing inflammatory cytokine production and oxidative stress.
SUPPORT MODEL ORGANISM PMID:34773846

States that ECC-BYF diminished oxidative stress in the PM2.5-aggravated COPD rats; the BALF T-SOD and MDA records in this assay are part of that measurement.

OX:li-beas2b-ros

ROS fluorescence in PM2.5-exposed Beas-2B cells

Intracellular ROS imaged with DCFH-DA in Beas-2B pretreated for 24 h with 16 ug/mL ECC-BYF, 500 uM NAC or DMSO and then exposed to 100 ug/mL PM2.5 for 24 h. ECC-BYF-pretreated cells showed a significant reduction of ROS fluorescence compared with the PM2.5-exposed model cells. Fluorescence intensity is shown only as images in Fig. 4b; no quantitative value is recorded.

ros probe type: DCFH-DA

Exposure conditions

ConditionAgentConcentrationDuration
DMSO vehicle 24 h pretreatment, no PM2.5 (control)
EXPOSURE:li-beas2b-dmso-24h
— — 24 hour
PM2.5 suspension 100 ug/mL for 24 h after DMSO pretreatment
EXPOSURE:li-beas2b-pm25-100-24h
fine respirable suspended particulate matter
ENVO:01000415
100 microgram per milliliter 24 hour
ECC-BYF 16 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf16-pm25-24h
— 16 microgram per milliliter 24 hour
N-acetylcysteine 500 uM pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-nac500-pm25-24h
N-acetyl-L-cysteine
CHEBI:28939
500 micromolar 24 hour

Outputs

GroupOutputDescription
vehicle_control DMSO vehicle Beas-2B - ROS fluorescence
OX:li-beas2b-ros-output-vehicle · under EXPOSURE:li-beas2b-dmso-24h
Reference condition. Image-only; no value recorded.
treated PM2.5-exposed Beas-2B - ROS fluorescence
OX:li-beas2b-ros-output-pm25 · under EXPOSURE:li-beas2b-pm25-100-24h
ROS fluorescence increased relative to vehicle. Image-only; no value recorded.
treated ECC-BYF-pretreated PM2.5-exposed Beas-2B - ROS fluorescence
OX:li-beas2b-ros-output-eccbyf · under EXPOSURE:li-beas2b-eccbyf16-pm25-24h
Significant reduction of ROS fluorescence versus the PM2.5 model cells. Image-only; no value recorded.
treated NAC-pretreated PM2.5-exposed Beas-2B - ROS fluorescence
OX:li-beas2b-ros-output-nac · under EXPOSURE:li-beas2b-nac500-pm25-24h
Positive antioxidant comparator. Image-only; no value recorded.

Evidence

Furthermore, ECC-BYF pretreatment markedly decreased the fluorescence intensity of reactive oxygen species (ROS) in PM2.5-induced human bronchial epithelial (Beas-2B) cells and primary mouse tracheal epithelial cells (MTECs), as well as reversing the imbalance between oxidants and antioxidants in Beas-2B.
SUPPORT IN VITRO PMID:34773846

States exactly what this assay records: ECC-BYF pretreatment markedly lowered ROS fluorescence in PM2.5-exposed Beas-2B cells.

OX:li-beas2b-redox-dose

MDA, T-SOD and GSH-Px in PM2.5-exposed Beas-2B across an ECC-BYF dose series

Beas-2B pretreated for 24 h with 2, 4, 8 or 16 ug/mL ECC-BYF, 500 uM NAC or DMSO, then exposed to 100 ug/mL PM2.5 for 24 h. A dose-dependent increase in T-SOD and GSH-Px and a dose-dependent decrease in MDA were observed with ECC-BYF pretreatment compared with the PM2.5 model group. Cell viability (CCK8) changed only slightly, so 2-16 ug/mL ECC-BYF is non-toxic to Beas-2B. Values reported only in Fig. 4c-e; none recorded.

Exposure conditions

ConditionAgentConcentrationDuration
DMSO vehicle 24 h pretreatment, no PM2.5 (control)
EXPOSURE:li-beas2b-dmso-24h
— — 24 hour
PM2.5 suspension 100 ug/mL for 24 h after DMSO pretreatment
EXPOSURE:li-beas2b-pm25-100-24h
fine respirable suspended particulate matter
ENVO:01000415
100 microgram per milliliter 24 hour
ECC-BYF 2 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf2-pm25-24h
— 2 microgram per milliliter 24 hour
ECC-BYF 4 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf4-pm25-24h
— 4 microgram per milliliter 24 hour
ECC-BYF 8 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf8-pm25-24h
— 8 microgram per milliliter 24 hour
ECC-BYF 16 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf16-pm25-24h
— 16 microgram per milliliter 24 hour
N-acetylcysteine 500 uM pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-nac500-pm25-24h
N-acetyl-L-cysteine
CHEBI:28939
500 micromolar 24 hour

Outputs

GroupOutputDescription
vehicle_control DMSO vehicle Beas-2B - MDA, T-SOD, GSH-Px
OX:li-beas2b-redox-dose-output-vehicle · under EXPOSURE:li-beas2b-dmso-24h
Reference condition. Figure-only values; none recorded.
treated PM2.5-exposed Beas-2B - MDA, T-SOD, GSH-Px
OX:li-beas2b-redox-dose-output-pm25 · under EXPOSURE:li-beas2b-pm25-100-24h
Model group against which the ECC-BYF doses were compared. Figure-only values; none recorded.
treated ECC-BYF 2 ug/mL + PM2.5 Beas-2B - MDA, T-SOD, GSH-Px
OX:li-beas2b-redox-dose-output-eccbyf2 · under EXPOSURE:li-beas2b-eccbyf2-pm25-24h
Lowest dose of the dose-dependent series. Figure-only values; none recorded.
treated ECC-BYF 4 ug/mL + PM2.5 Beas-2B - MDA, T-SOD, GSH-Px
OX:li-beas2b-redox-dose-output-eccbyf4 · under EXPOSURE:li-beas2b-eccbyf4-pm25-24h
Second dose of the dose-dependent series. Figure-only values; none recorded.
treated ECC-BYF 8 ug/mL + PM2.5 Beas-2B - MDA, T-SOD, GSH-Px
OX:li-beas2b-redox-dose-output-eccbyf8 · under EXPOSURE:li-beas2b-eccbyf8-pm25-24h
Third dose of the dose-dependent series. Figure-only values; none recorded.
treated ECC-BYF 16 ug/mL + PM2.5 Beas-2B - MDA, T-SOD, GSH-Px
OX:li-beas2b-redox-dose-output-eccbyf16 · under EXPOSURE:li-beas2b-eccbyf16-pm25-24h
Highest dose tested in this panel; largest increase in T-SOD and GSH-Px and largest decrease in MDA. Figure-only values; none recorded.
treated NAC 500 uM + PM2.5 Beas-2B - MDA, T-SOD, GSH-Px
OX:li-beas2b-redox-dose-output-nac · under EXPOSURE:li-beas2b-nac500-pm25-24h
Positive antioxidant comparator. Figure-only values; none recorded.

Evidence

Furthermore, ECC-BYF pretreatment markedly decreased the fluorescence intensity of reactive oxygen species (ROS) in PM2.5-induced human bronchial epithelial (Beas-2B) cells and primary mouse tracheal epithelial cells (MTECs), as well as reversing the imbalance between oxidants and antioxidants in Beas-2B.
SUPPORT IN VITRO PMID:34773846

The clause about reversing the oxidant/antioxidant imbalance in Beas-2B is the finding this assay records through MDA (oxidant) and T-SOD and GSH-Px (antioxidants).

OX:li-mtec-ros

ROS fluorescence in PM2.5-exposed primary mouse tracheal epithelial cells

MTECs isolated from the tracheas of C57BL/6 mice exposed for 8 weeks either to filtered air or to cigarette smoke plus intranasal Klebsiella pneumoniae (COPD model; 16 mice, n = 8 per group), cultured at air-liquid interface, then pretreated with ECC-BYF and exposed to PM2.5. Intracellular ROS increased in MTECs from both normal and COPD mice after PM2.5 exposure, and ECC-BYF pretreatment decreased ROS relative to the PM2.5-exposed cells. Images only in Fig. 4f; no value recorded.

ros probe type: DCFH-DA

Exposure conditions

ConditionAgentConcentrationDuration
Untreated MTECs at air-liquid interface, no PM2.5 (control)
EXPOSURE:li-mtec-vehicle-24h
— — 24 hour
PM2.5 suspension 100 ug/mL for 24 h in MTECs
EXPOSURE:li-mtec-pm25-100-24h
fine respirable suspended particulate matter
ENVO:01000415
100 microgram per milliliter 24 hour
ECC-BYF 16 ug/mL pretreatment, then PM2.5 100 ug/mL for 24 h in MTECs
EXPOSURE:li-mtec-eccbyf16-pm25-24h
— 16 microgram per milliliter 24 hour

Outputs

GroupOutputDescription
control Untreated MTECs - ROS fluorescence
OX:li-mtec-ros-output-control · under EXPOSURE:li-mtec-vehicle-24h
Reference condition. Image-only; no value recorded.
treated PM2.5-exposed MTECs - ROS fluorescence
OX:li-mtec-ros-output-pm25 · under EXPOSURE:li-mtec-pm25-100-24h
Intracellular ROS increased in MTECs from both normal and COPD mice on PM2.5 exposure. Image-only; no value recorded.
treated ECC-BYF-pretreated PM2.5-exposed MTECs - ROS fluorescence
OX:li-mtec-ros-output-eccbyf · under EXPOSURE:li-mtec-eccbyf16-pm25-24h
Decreased ROS compared with the PM2.5-induced cells. Image-only; no value recorded.

Evidence

Furthermore, ECC-BYF pretreatment markedly decreased the fluorescence intensity of reactive oxygen species (ROS) in PM2.5-induced human bronchial epithelial (Beas-2B) cells and primary mouse tracheal epithelial cells (MTECs), as well as reversing the imbalance between oxidants and antioxidants in Beas-2B.
SUPPORT IN VITRO PMID:34773846

Names the MTEC result this assay records: ECC-BYF pretreatment markedly decreased ROS fluorescence in PM2.5-induced primary mouse tracheal epithelial cells.

Gene expression assays

GE:li-nrf2-ho1-rat-lung

Nrf2 and HO-1 protein in rat lung tissue (Western blot)

Western blot of the antioxidant-response regulators Nrf2 and HO-1 in lung tissue from the four rat groups. Both were increased in the ECC-BYF group compared with the model group, further validating the antioxidant effect of ECC-BYF. Blots only in Fig. 3c; no densitometric value is reported in the text, so no value is recorded.

target gene: NCBIGene:83619 gene expression method: Western blot normalization reference: GAPDH

Exposure conditions

ConditionAgentConcentrationDuration
Filtered air (PM2.5 < 10 ug/m3) with distilled water gavage, healthy control rats
EXPOSURE:li-rat-filtered-air
— — 8 week
Concentrated ambient PM2.5, 4 h/day for 8 weeks, in rats with pre-existing COPD
EXPOSURE:li-rat-pm25-8wk
fine respirable suspended particulate matter
ENVO:01000415
739.97 microgram per cubic meter 8 week
ECC-BYF 5.5 mg/kg/d by gavage before daily PM2.5 exposure, 8 weeks
EXPOSURE:li-rat-eccbyf-pm25-8wk
— 5.5 milligram per kilogram per day 8 week

Outputs

GroupOutputDescription
control Healthy control rats - lung Nrf2 and HO-1
GE:li-nrf2-ho1-rat-lung-output-control · under EXPOSURE:li-rat-filtered-air
Reference group. Blot-only; no value recorded.
treated PM2.5-aggravated COPD rats - lung Nrf2 and HO-1
GE:li-nrf2-ho1-rat-lung-output-model · under EXPOSURE:li-rat-pm25-8wk
Model group against which the ECC-BYF increase was judged. Blot-only; no value recorded.
treated ECC-BYF-treated rats - lung Nrf2 and HO-1
GE:li-nrf2-ho1-rat-lung-output-eccbyf · under EXPOSURE:li-rat-eccbyf-pm25-8wk
Increased Nrf2 and HO-1 compared with the model group. Blot-only; no value recorded.

Evidence

In comparison, ECC-BYF administration significantly enhanced lung function, alleviated alveolar destruction, inflammatory cell infiltration, mucus hypersecretion, and collagen deposition, along with diminishing inflammatory cytokine production and oxidative stress.
SUPPORT MODEL ORGANISM PMID:34773846

The diminished oxidative stress this quote reports in ECC-BYF-treated rats is what the raised Nrf2 and HO-1 in lung tissue recorded here demonstrate at the protein level.

GE:li-foxo3a-rat-lung

FOXO3a, SOD2 and CAT expression in rat lung tissue

Both protein (Western blot, Fig. 5c) and mRNA (qPCR, Fig. 5d) expression of FOXO3a, together with its downstream antioxidants SOD2 and CAT, were markedly decreased in lung tissue from the PM2.5-aggravated COPD model group, and were up-regulated by ECC-BYF or NAC administration. Values reported only in figures; none recorded.

target gene: NCBIGene:294515 gene expression method: Western blot and quantitative real-time PCR normalization reference: GAPDH

Exposure conditions

ConditionAgentConcentrationDuration
Filtered air (PM2.5 < 10 ug/m3) with distilled water gavage, healthy control rats
EXPOSURE:li-rat-filtered-air
— — 8 week
Concentrated ambient PM2.5, 4 h/day for 8 weeks, in rats with pre-existing COPD
EXPOSURE:li-rat-pm25-8wk
fine respirable suspended particulate matter
ENVO:01000415
739.97 microgram per cubic meter 8 week
ECC-BYF 5.5 mg/kg/d by gavage before daily PM2.5 exposure, 8 weeks
EXPOSURE:li-rat-eccbyf-pm25-8wk
— 5.5 milligram per kilogram per day 8 week
N-acetylcysteine 108 mg/kg/d by gavage before daily PM2.5 exposure, 8 weeks
EXPOSURE:li-rat-nac-pm25-8wk
N-acetyl-L-cysteine
CHEBI:28939
108 milligram per kilogram per day 8 week

Outputs

GroupOutputDescription
control Healthy control rats - lung FOXO3a, SOD2, CAT
GE:li-foxo3a-rat-lung-output-control · under EXPOSURE:li-rat-filtered-air
Reference group. Figure-only values; none recorded.
treated PM2.5-aggravated COPD rats - lung FOXO3a, SOD2, CAT
GE:li-foxo3a-rat-lung-output-model · under EXPOSURE:li-rat-pm25-8wk
Protein and mRNA of FOXO3a, SOD2 and CAT markedly decreased versus control. Figure-only values; none recorded.
treated ECC-BYF-treated rats - lung FOXO3a, SOD2, CAT
GE:li-foxo3a-rat-lung-output-eccbyf · under EXPOSURE:li-rat-eccbyf-pm25-8wk
FOXO3a, SOD2 and CAT up-regulated versus the model group. Figure-only values; none recorded.
treated NAC-treated rats - lung FOXO3a, SOD2, CAT
GE:li-foxo3a-rat-lung-output-nac · under EXPOSURE:li-rat-nac-pm25-8wk
FOXO3a, SOD2 and CAT up-regulated versus the model group. Figure-only values; none recorded.

Evidence

In conclusion, ECC-BYF can protect pre-existing COPD against PM2.5 contamination by exerting a profound antioxidative influence via regulating miR-155/FOXO3a signaling.
SUPPORT MODEL ORGANISM PMID:34773846

The paper's conclusion that ECC-BYF acts on pre-existing COPD through miR-155/FOXO3a signaling rests on the in vivo FOXO3a, SOD2 and CAT measurements recorded in this assay.

GE:li-foxo3a-beas2b-dose

FOXO3a protein and mRNA in PM2.5-exposed Beas-2B across an ECC-BYF dose series

Beas-2B pretreated for 24 h with 2, 4, 8, 16 or 32 ug/mL ECC-BYF, then exposed to 100 ug/mL PM2.5 for 24 h. Western blot (Fig. 5a) showed ECC-BYF significantly elevated FOXO3a protein in a dose-dependent fashion, and qPCR (Fig. 5b) confirmed up-regulated FOXO3a mRNA. Values reported only in figures; none recorded.

target gene: NCBIGene:2309 gene expression method: Western blot and quantitative real-time PCR normalization reference: GAPDH

Exposure conditions

ConditionAgentConcentrationDuration
PM2.5 suspension 100 ug/mL for 24 h after DMSO pretreatment
EXPOSURE:li-beas2b-pm25-100-24h
fine respirable suspended particulate matter
ENVO:01000415
100 microgram per milliliter 24 hour
ECC-BYF 2 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf2-pm25-24h
— 2 microgram per milliliter 24 hour
ECC-BYF 4 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf4-pm25-24h
— 4 microgram per milliliter 24 hour
ECC-BYF 8 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf8-pm25-24h
— 8 microgram per milliliter 24 hour
ECC-BYF 16 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf16-pm25-24h
— 16 microgram per milliliter 24 hour
ECC-BYF 32 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf32-pm25-24h
— 32 microgram per milliliter 24 hour

Outputs

GroupOutputDescription
treated PM2.5-exposed Beas-2B - FOXO3a
GE:li-foxo3a-beas2b-dose-output-pm25 · under EXPOSURE:li-beas2b-pm25-100-24h
Model condition without ECC-BYF. Figure-only values; none recorded.
treated ECC-BYF 2 ug/mL + PM2.5 Beas-2B - FOXO3a
GE:li-foxo3a-beas2b-dose-output-eccbyf2 · under EXPOSURE:li-beas2b-eccbyf2-pm25-24h
Lowest dose of the dose-dependent series. Figure-only values; none recorded.
treated ECC-BYF 4 ug/mL + PM2.5 Beas-2B - FOXO3a
GE:li-foxo3a-beas2b-dose-output-eccbyf4 · under EXPOSURE:li-beas2b-eccbyf4-pm25-24h
Second dose of the dose-dependent series. Figure-only values; none recorded.
treated ECC-BYF 8 ug/mL + PM2.5 Beas-2B - FOXO3a
GE:li-foxo3a-beas2b-dose-output-eccbyf8 · under EXPOSURE:li-beas2b-eccbyf8-pm25-24h
Third dose of the dose-dependent series. Figure-only values; none recorded.
treated ECC-BYF 16 ug/mL + PM2.5 Beas-2B - FOXO3a
GE:li-foxo3a-beas2b-dose-output-eccbyf16 · under EXPOSURE:li-beas2b-eccbyf16-pm25-24h
Fourth dose of the dose-dependent series. Figure-only values; none recorded.
treated ECC-BYF 32 ug/mL + PM2.5 Beas-2B - FOXO3a
GE:li-foxo3a-beas2b-dose-output-eccbyf32 · under EXPOSURE:li-beas2b-eccbyf32-pm25-24h
Highest dose tested for FOXO3a protein and mRNA. Figure-only values; none recorded.

Evidence

Meanwhile, ECC-BYF elevated FOXO3a while inhibiting miR-155 expression dose -dependently.
SUPPORT IN VITRO PMID:34773846

States the dose-dependent elevation of FOXO3a by ECC-BYF that this assay records across the 2-32 ug/mL series.

GE:li-mir155-beas2b-pm25-dose

miR-155-5p in Beas-2B across a PM2.5 dose series

qPCR of miR-155-5p (normalized to U6) in Beas-2B treated with 10, 25, 50 or 100 ug/mL PM2.5 suspension for 24 h. A significant increase of miR-155 was observed after PM2.5 stimulation (Fig. 6b). Values reported only in the figure; none recorded.

target gene: NCBIGene:406947 gene expression method: quantitative real-time PCR normalization reference: U6 snRNA

Exposure conditions

ConditionAgentConcentrationDuration
PM2.5 suspension 10 ug/mL for 24 h
EXPOSURE:li-beas2b-pm25-10-24h
fine respirable suspended particulate matter
ENVO:01000415
10 microgram per milliliter 24 hour
PM2.5 suspension 25 ug/mL for 24 h
EXPOSURE:li-beas2b-pm25-25-24h
fine respirable suspended particulate matter
ENVO:01000415
25 microgram per milliliter 24 hour
PM2.5 suspension 50 ug/mL for 24 h
EXPOSURE:li-beas2b-pm25-50-24h
fine respirable suspended particulate matter
ENVO:01000415
50 microgram per milliliter 24 hour
PM2.5 suspension 100 ug/mL for 24 h after DMSO pretreatment
EXPOSURE:li-beas2b-pm25-100-24h
fine respirable suspended particulate matter
ENVO:01000415
100 microgram per milliliter 24 hour

Outputs

GroupOutputDescription
treated Beas-2B + PM2.5 10 ug/mL - miR-155-5p
GE:li-mir155-beas2b-pm25-dose-output-10 · under EXPOSURE:li-beas2b-pm25-10-24h
Lowest PM2.5 dose. Figure-only values; none recorded.
treated Beas-2B + PM2.5 25 ug/mL - miR-155-5p
GE:li-mir155-beas2b-pm25-dose-output-25 · under EXPOSURE:li-beas2b-pm25-25-24h
Second PM2.5 dose. Figure-only values; none recorded.
treated Beas-2B + PM2.5 50 ug/mL - miR-155-5p
GE:li-mir155-beas2b-pm25-dose-output-50 · under EXPOSURE:li-beas2b-pm25-50-24h
Third PM2.5 dose. Figure-only values; none recorded.
treated Beas-2B + PM2.5 100 ug/mL - miR-155-5p
GE:li-mir155-beas2b-pm25-dose-output-100 · under EXPOSURE:li-beas2b-pm25-100-24h
Highest PM2.5 dose; significant increase of miR-155 after PM2.5 stimulation. Figure-only values; none recorded.

Evidence

In this study, we used an established PM2.5-aggravated COPD rat model in vivo to evaluate the protective effect of ECC-BYF, and focused on its antioxidative role in PM2.5-stimulated bronchial epithelial cells via regulating microRNA (miR)-155/ forkhead box class O3a (FOXO3a) pathway.
SUPPORT IN VITRO PMID:34773846

Establishes that miR-155 was measured in PM2.5-stimulated bronchial epithelial cells, which is the exposure series this assay records; the dose-dependence itself is shown in Fig. 6b of the full text.

GE:li-mir155-beas2b-eccbyf-dose

miR-155-5p in PM2.5-exposed Beas-2B across an ECC-BYF dose series

qPCR of miR-155-5p in Beas-2B pretreated for 24 h with 2, 4, 8 or 16 ug/mL ECC-BYF and then exposed to 100 ug/mL PM2.5 for 24 h. A dose-dependent decrease of miR-155 was found in response to ECC-BYF treatment (Fig. 6c). Values reported only in the figure; none recorded.

target gene: NCBIGene:406947 gene expression method: quantitative real-time PCR normalization reference: U6 snRNA

Exposure conditions

ConditionAgentConcentrationDuration
PM2.5 suspension 100 ug/mL for 24 h after DMSO pretreatment
EXPOSURE:li-beas2b-pm25-100-24h
fine respirable suspended particulate matter
ENVO:01000415
100 microgram per milliliter 24 hour
ECC-BYF 2 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf2-pm25-24h
— 2 microgram per milliliter 24 hour
ECC-BYF 4 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf4-pm25-24h
— 4 microgram per milliliter 24 hour
ECC-BYF 8 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf8-pm25-24h
— 8 microgram per milliliter 24 hour
ECC-BYF 16 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf16-pm25-24h
— 16 microgram per milliliter 24 hour

Outputs

GroupOutputDescription
treated PM2.5-exposed Beas-2B - miR-155-5p
GE:li-mir155-beas2b-eccbyf-dose-output-pm25 · under EXPOSURE:li-beas2b-pm25-100-24h
Model condition without ECC-BYF. Figure-only values; none recorded.
treated ECC-BYF 2 ug/mL + PM2.5 Beas-2B - miR-155-5p
GE:li-mir155-beas2b-eccbyf-dose-output-eccbyf2 · under EXPOSURE:li-beas2b-eccbyf2-pm25-24h
Lowest dose of the dose-dependent series. Figure-only values; none recorded.
treated ECC-BYF 4 ug/mL + PM2.5 Beas-2B - miR-155-5p
GE:li-mir155-beas2b-eccbyf-dose-output-eccbyf4 · under EXPOSURE:li-beas2b-eccbyf4-pm25-24h
Second dose of the dose-dependent series. Figure-only values; none recorded.
treated ECC-BYF 8 ug/mL + PM2.5 Beas-2B - miR-155-5p
GE:li-mir155-beas2b-eccbyf-dose-output-eccbyf8 · under EXPOSURE:li-beas2b-eccbyf8-pm25-24h
Third dose of the dose-dependent series. Figure-only values; none recorded.
treated ECC-BYF 16 ug/mL + PM2.5 Beas-2B - miR-155-5p
GE:li-mir155-beas2b-eccbyf-dose-output-eccbyf16 · under EXPOSURE:li-beas2b-eccbyf16-pm25-24h
Highest dose; largest decrease of miR-155-5p. Figure-only values; none recorded.

Evidence

Meanwhile, ECC-BYF elevated FOXO3a while inhibiting miR-155 expression dose -dependently.
SUPPORT IN VITRO PMID:34773846

States the dose-dependent inhibition of miR-155 expression by ECC-BYF that this assay's dose series records.

GE:li-foxo3a-mir155-mimic

FOXO3a protein in miR-155-overexpressing Beas-2B with or without ECC-BYF

Beas-2B transfected with miR-155 mimic (50 nM) or negative control, pretreated with 16 ug/mL ECC-BYF for 24 h where indicated, and exposed to 100 ug/mL PM2.5 for 24 h. Compared with ECC-BYF-treated cells, miR-155 mimic-pretreated cells showed a significant decrease of FOXO3a protein (Fig. 6d). Values reported only in the figure; none recorded.

target gene: NCBIGene:2309 gene expression method: Western blot normalization reference: GAPDH

Exposure conditions

ConditionAgentConcentrationDuration
ECC-BYF 16 ug/mL pretreatment 24 h, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-eccbyf16-pm25-24h
— 16 microgram per milliliter 24 hour
miR-155 mimic 50 nM transfection, ECC-BYF 16 ug/mL pretreatment, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-mir155mimic-eccbyf-pm25
— 16 microgram per milliliter 24 hour

Outputs

GroupOutputDescription
treated ECC-BYF-treated PM2.5-exposed Beas-2B - FOXO3a protein
GE:li-foxo3a-mir155-mimic-output-eccbyf · under EXPOSURE:li-beas2b-eccbyf16-pm25-24h
Comparator condition without miR-155 overexpression. Figure-only values; none recorded.
treated miR-155 mimic + ECC-BYF + PM2.5 Beas-2B - FOXO3a protein
GE:li-foxo3a-mir155-mimic-output-mimic · under EXPOSURE:li-beas2b-mir155mimic-eccbyf-pm25
Significant decrease of FOXO3a protein compared with the ECC-BYF-treated cells. Figure-only values; none recorded.

Evidence

In vitro transfection of miR-155 mimic into Beas-2B significantly decreased FOXO3a protein expression, accompanied by the reduced superoxide dismutase 2 (SOD2) and catalase (CAT) expressions, thus eliminating the protective effect of ECC-BYF on PM2.5-evoked oxidative stress.
SUPPORT IN VITRO PMID:34773846

States exactly what this assay records: transfecting a miR-155 mimic into Beas-2B significantly decreased FOXO3a protein expression.

GE:li-sod2-cat-mir155-foxo3a-oe

SOD2 and CAT mRNA in miR-155-mimic Beas-2B with or without FOXO3a overexpression

qPCR of SOD2 and CAT mRNA in miR-155-mimic-transfected Beas-2B with or without co-transfected pcDNA-FOXO3a (14 ug), pretreated with 16 ug/mL ECC-BYF for 24 h and exposed to 100 ug/mL PM2.5 for 24 h. miR-155 mimic reduced SOD2 and CAT mRNA; FOXO3a plasmid co-transfected cells showed a significant increase in SOD2 and CAT mRNA compared with the miR-155-mimic cells (Fig. 6e). Values reported only in the figure; none recorded.

target gene: NCBIGene:6648 gene expression method: quantitative real-time PCR normalization reference: GAPDH

Exposure conditions

ConditionAgentConcentrationDuration
miR-155 mimic 50 nM transfection, ECC-BYF 16 ug/mL pretreatment, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-mir155mimic-eccbyf-pm25
— 16 microgram per milliliter 24 hour
miR-155 mimic plus pcDNA-FOXO3a co-transfection, ECC-BYF 16 ug/mL pretreatment, then PM2.5 100 ug/mL for 24 h
EXPOSURE:li-beas2b-mir155mimic-foxo3aoe-pm25
— 16 microgram per milliliter 24 hour

Outputs

GroupOutputDescription
treated miR-155 mimic Beas-2B - SOD2 and CAT mRNA
GE:li-sod2-cat-mir155-foxo3a-oe-output-mimic · under EXPOSURE:li-beas2b-mir155mimic-eccbyf-pm25
Reduced SOD2 and CAT mRNA in response to PM2.5 despite ECC-BYF pretreatment. Figure-only values; none recorded.
treated miR-155 mimic + FOXO3a overexpression Beas-2B - SOD2 and CAT mRNA
GE:li-sod2-cat-mir155-foxo3a-oe-output-foxo3aoe · under EXPOSURE:li-beas2b-mir155mimic-foxo3aoe-pm25
Significant increase in SOD2 and CAT mRNA compared with the miR-155-mimic cells. Figure-only values; none recorded.

Evidence

In vitro transfection of miR-155 mimic into Beas-2B significantly decreased FOXO3a protein expression, accompanied by the reduced superoxide dismutase 2 (SOD2) and catalase (CAT) expressions, thus eliminating the protective effect of ECC-BYF on PM2.5-evoked oxidative stress.
SUPPORT IN VITRO PMID:34773846

States the reduced SOD2 and CAT expression in miR-155-mimic Beas-2B that this assay's mimic condition records.

Nonethless, FOXO3a overexpression could partially restore the antioxidative effect of ECC-BYF.
SUPPORT IN VITRO PMID:34773846

States the rescue this assay's FOXO3a-overexpression condition records: co-transfected FOXO3a partially restored the antioxidant response.

Key-event relationships

KER:li-mir155-to-foxo3a

Increased miR-155 expression leads to decreased FOXO3a expression

miR-155 binds the 3'-UTR of FOXO3a mRNA and suppresses it. Transfecting a miR-155 mimic into Beas-2B significantly decreased FOXO3a protein, and ECC-BYF raised FOXO3a while lowering miR-155 dose-dependently.

In vitro transfection of miR-155 mimic into Beas-2B significantly decreased FOXO3a protein expression, accompanied by the reduced superoxide dismutase 2 (SOD2) and catalase (CAT) expressions, thus eliminating the protective effect of ECC-BYF on PM2.5-evoked oxidative stress.
SUPPORT IN VITRO PMID:34773846

A gain-of-function experiment: raising miR-155 alone lowered FOXO3a protein, which is the directional link this relationship asserts.

KER:li-foxo3a-to-oxidative-stress

Decreased FOXO3a expression leads to increased oxidative stress

FOXO3a drives transcription of the antioxidant enzymes SOD2 and CAT. Lowering FOXO3a with a miR-155 mimic reduced SOD2 and CAT and abolished the antioxidant protection of ECC-BYF, while FOXO3a overexpression partially restored it.

Nonethless, FOXO3a overexpression could partially restore the antioxidative effect of ECC-BYF.
SUPPORT IN VITRO PMID:34773846

A rescue experiment: restoring FOXO3a restored antioxidant capacity, which is the causal direction this relationship asserts.

KER:li-oxidative-stress-to-lung-function

Increased oxidative stress leads to decreased lung function

In PM2.5-aggravated COPD rats the oxidant/antioxidant imbalance in serum and BALF accompanied reduced lung function and lung tissue remodeling, and treatments that suppressed oxidative stress (ECC-BYF, NAC) also improved lung function.

In comparison, ECC-BYF administration significantly enhanced lung function, alleviated alveolar destruction, inflammatory cell infiltration, mucus hypersecretion, and collagen deposition, along with diminishing inflammatory cytokine production and oxidative stress.
SUPPORT MODEL ORGANISM PMID:34773846

The same intervention both diminished oxidative stress and enhanced lung function in the same animals, which is the correlative in vivo support this relationship rests on.

Protocols

PROTOCOL:li-pft-001

Noninvasive and invasive pulmonary function testing in rats

type: SpirometryProtocol

Unrestrained lung function (tidal volume VT, peak expiratory flow PEF, expiratory flow at 50% tidal volume EF50) measured by whole-body plethysmography every fourth week from week 1 to week 16. At week 17 rats were anesthetized with 3% pentobarbital sodium (35 mg/kg, ip) and FVC, FEV0.3 and FEV0.3/FVC were measured on an invasive pulmonary function test system. n = 8 per group.

spirometry standard: whole-body plethysmography (noninvasive) plus invasive pulmonary function test system plethysmography method: unrestrained whole-body plethysmography

Equipment: Whole-body plethysmograph; Invasive pulmonary function test (PFT) system

PROTOCOL:li-he-001

Hematoxylin-eosin staining and histomorphometry of rat lung

type: StainingProtocol

Lung tissues collected at week 17 and stained with hematoxylin-eosin. Light microscopy scored interalveolar septa thickening, inflammatory cell infiltration, airway lumen narrowing and goblet cell hyperplasia in the airway epithelium. Histomorphometry reported mean linear intercept (MLI), mean alveolar number (MAN) and a total lung injury score. n = 6-8 per group.

staining type: hematoxylin-eosin (H&E) detection method: light microscopy with histomorphometric image analysis

Equipment: Microtome; Light microscope

PROTOCOL:li-redoxkit-001

Colorimetric kit assays for MDA, T-SOD and GSH-Px

type: MolecularAssayProtocol

Malondialdehyde (MDA), total superoxide dismutase (T-SOD) and glutathione peroxidase (GSH-Px) determined in rat serum and bronchoalveolar lavage fluid, and in Beas-2B lysates, with matched commercial kits according to the manufacturer's protocol (Nanjing Jiancheng Co., Jiangsu, China).

detection method: colorimetric assay kits (Nanjing Jiancheng)

Equipment: Microplate reader; MDA / T-SOD / GSH-Px assay kits (Nanjing Jiancheng Co.)

PROTOCOL:li-dcfhda-001

DCFH-DA immunofluorescence detection of intracellular ROS

type: ImagingProtocol

Intracellular reactive oxygen species detected with a 2',7'-dichlorofluorescein-diacetate (DCFH-DA) probe in Beas-2B cells (scale bar 100 um) and in primary mouse tracheal epithelial cells (scale bar 200 um); results reported as ROS fluorescence intensity.

fluorescent labeling: 2',7'-dichlorofluorescein-diacetate (DCFH-DA) fluorescent tracer: DCFH-DA

Equipment: Fluorescence microscope; DCFH-DA probe

PROTOCOL:li-qpcr-001

Quantitative real-time PCR for FOXO3a, SOD2, CAT and miR-155-5p

type: MolecularAssayProtocol

Total RNA isolated with TRIZOL from lung tissues or cultured cells, reverse transcribed with a high capacity cDNA reverse transcription kit, and quantified on a 7500 real-time PCR system with SYBR Green Master Mix. Relative expression analysed by the 2^-ddCT method. miR-155-5p normalized to U6 snRNA; FOXO3a, SOD2 and CAT mRNA normalized to GAPDH.

detection method: SYBR Green quantitative real-time PCR (7500 real-time PCR system) normalization method: 2^-ddCT relative quantification reference gene: GAPDH (mRNA targets); U6 snRNA (miR-155-5p)
PROTOCOL:li-wb-001

Western blotting for Nrf2, HO-1, FOXO3a and SOD2

type: MolecularAssayProtocol

Protein extraction, SDS-PAGE and probing with Nrf2 (Proteintech 16396-1-AP), HO-1 (GeneTex GTX101147), FOXO3a (GeneTex GTX100277) and SOD2 (GeneTex GTX116093) antibodies, all at 1:1000. GAPDH used as internal control.

detection method: chemiluminescent immunoblot normalization method: GAPDH loading control

Equipment: SDS-PAGE apparatus; Chemiluminescence imaging system

PROTOCOL:li-transfect-001

Lipofectamine transfection of miR-155 mimic and pcDNA-FOXO3a

type: MolecularAssayProtocol

Beas-2B cells seeded in six-well plates at 60-70% confluence in serum-free medium and transfected with pcDNA-FOXO3a plasmid (14 ug), miR-155 mimic (50 nM) or the matched negative controls (Guangzhou RiboBio) complexed with Lipofectamine 2000. After 24 h the cells were used for ECC-BYF treatment and PM2.5 exposure.

detection method: Lipofectamine 2000 transient transfection

Equipment: Lipofectamine 2000 (Invitrogen); miR-155 mimic and pcDNA-FOXO3a plasmid (Guangzhou RiboBio)