Prenatal smoke exposure dysregulates lung epithelial cell differentiation in mouse offspring: role for AREG-induced EGFR signaling.

Mus musculus exposure to cigarette smoking via maternal

Study subjects

SUBJECT:lkhagvadorj-neonate-smoke

One-day-old C57Bl/6 mouse offspring of smoke- or air-exposed dams

type: InVivoSubject Mus musculus NCBITaxon:10090 sex: male and female (analysed separately as well as pooled) age: 1 day

C57Bl/6 neonates euthanized one day after birth. n=16 offspring from nonsmoking mothers (n=3 dams), n=24 from smoking mothers (n=4 dams). Dams were 8-10 wk old at the start of exposure. Offspring themselves were never directly exposed. The left lung was used for RNA isolation (RT-qPCR) and the right lung was formalin-fixed and paraffin-embedded for histology.

soma:lkhagvadorj-bronchiolar-organoid-001

Three-dimensional mouse bronchiolar lung organoid

type: CellularSystem Mus musculus NCBITaxon:10090 epithelial cell of lung CL:0000082
soma:lkhagvadorj-alveolar-organoid-001

Three-dimensional mouse alveolar lung organoid

type: CellularSystem Mus musculus NCBITaxon:10090 pulmonary alveolar type 2 cell CL:0002063

Ciliary function assays

CIL:lkhagvadorj-ciliated-cells-neonate

Ciliated cell number in neonatal lung - prenatal air vs prenatal smoke

Tubulin-positive (ciliated) cells counted manually in all airways of 1-day-old offspring and corrected per millimetre of airway (IHC, DAB). Prenatally smoke-exposed neonates had lower numbers of ciliated cells than controls (P<0.001), seen in both male and female offspring (P<0.0001). The paper reports these counts only as individual data points in Fig. 1B/1b, with no numeric mean, so no value is recorded here.

airway region: all airways of the neonatal lung (bronchial/bronchiolar epithelium) analysis software: Aperio-ImageScope 11.2.0.780; TissueFAXS

Exposure conditions

ConditionAgentConcentrationDuration
Prenatal fresh air - dams exposed to fresh air from 7 days before mating until euthanization; offspring assessed 1 day after birth
EXPOSURE:lkhagvadorj-prenatal-air
— — —
Prenatal cigarette smoke - dams exposed 2 x 50 min/day (10 cigarettes per session, 2R4F) from 7 days before mating throughout pregnancy until euthanization; offspring assessed 1 day after birth and never exposed postnatally
EXPOSURE:lkhagvadorj-prenatal-smoke
exposure to cigarette smoking via maternal
ECTO:0300003
— —

Outputs

GroupOutputDescription
control Ciliated cell number, offspring of air-exposed dams
CIL:lkhagvadorj-ciliated-cells-neonate-output-control · under EXPOSURE:lkhagvadorj-prenatal-air
treated Ciliated cell number, offspring of smoke-exposed dams
CIL:lkhagvadorj-ciliated-cells-neonate-output-smoke · under EXPOSURE:lkhagvadorj-prenatal-smoke

Evidence

We found that prenatal smoke exposure reduced the number of ciliated cells and the expression of the cilia-related transcription factor Foxj1
SUPPORT MODEL ORGANISM PMID:32783621

The abstract states directly that prenatal smoke exposure reduced the number of ciliated cells, which is the decrease this assay's smoke-exposed output records relative to its air-exposed control output.

CIL:lkhagvadorj-ciliated-cells-organoid

Ciliated cell number in bronchiolar lung organoids - non-treated vs AREG

Tubulin-positive cells counted in whole bronchiolar mouse lung organoids after 14 days (triple IF for tubulin, CC10 and KRT5), corrected for the total number of bronchial epithelial cells. AREG-treated organoids had lower numbers of tubulin-positive cells than non-treated organoids (P<0.001, Fig. 5D). This arm uses organoids derived from unexposed adult mice and tests AREG directly, not smoke. Counts are reported only as individual data points, so no value is recorded.

airway region: bronchiolar organoid epithelium analysis software: ImageJ

Exposure conditions

ConditionAgentConcentrationDuration
Non-treated mouse lung organoids, 14 days of culture
EXPOSURE:lkhagvadorj-organoid-untreated
— — 14 day
AREG 10 ng/mL refreshed every 2 days for 14 days in mouse lung organoids
EXPOSURE:lkhagvadorj-organoid-areg
— 10 nanogram per milliliter 14 day

Outputs

GroupOutputDescription
control Tubulin+ cell number, non-treated bronchiolar organoids
CIL:lkhagvadorj-ciliated-cells-organoid-output-control · under EXPOSURE:lkhagvadorj-organoid-untreated
treated Tubulin+ cell number, AREG-treated bronchiolar organoids
CIL:lkhagvadorj-ciliated-cells-organoid-output-areg · under EXPOSURE:lkhagvadorj-organoid-areg

Evidence

In bronchial organoids, AREG treatment resulted in fewer ciliated cells and more basal cells when compared with non-treated bronchiolar organoids.
SUPPORT MODEL ORGANISM PMID:32783621

The abstract states the organoid result this assay records: AREG treatment produced fewer ciliated cells than in non-treated bronchiolar organoids.

FOXJ assays

FOXJ:lkhagvadorj-foxj1-neonate

Foxj1 mRNA in neonatal lung - prenatal air vs prenatal smoke

Foxj1 mRNA measured by TaqMan RT-qPCR in RNA isolated from the left lung of 1-day-old offspring, normalized to Gapdh (2^-dCp). Lower Foxj1 expression in prenatally smoke-exposed offspring, especially in males (P=0.03 overall; male P=0.04; Fig. 1E/1e). Relative expression is plotted as individual values only, so no numeric level is recorded.

Exposure conditions

ConditionAgentConcentrationDuration
Prenatal fresh air - dams exposed to fresh air from 7 days before mating until euthanization; offspring assessed 1 day after birth
EXPOSURE:lkhagvadorj-prenatal-air
— — —
Prenatal cigarette smoke - dams exposed 2 x 50 min/day (10 cigarettes per session, 2R4F) from 7 days before mating throughout pregnancy until euthanization; offspring assessed 1 day after birth and never exposed postnatally
EXPOSURE:lkhagvadorj-prenatal-smoke
exposure to cigarette smoking via maternal
ECTO:0300003
— —

Outputs

GroupOutputDescription
control Foxj1 mRNA, offspring of air-exposed dams
FOXJ:lkhagvadorj-foxj1-neonate-output-control · under EXPOSURE:lkhagvadorj-prenatal-air
treated Foxj1 mRNA, offspring of smoke-exposed dams
FOXJ:lkhagvadorj-foxj1-neonate-output-smoke · under EXPOSURE:lkhagvadorj-prenatal-smoke

Evidence

prenatal smoke exposure reduced the number of ciliated cells and the expression of the cilia-related transcription factor Foxj1
SUPPORT MODEL ORGANISM PMID:32783621

The abstract names the reduced expression of the cilia-related transcription factor Foxj1 as a direct finding, which is what this assay's smoke-exposed output records.

Gene expression assays

GE:lkhagvadorj-spdef-neonate

Spdef mRNA in neonatal lung - prenatal air vs prenatal smoke

Spdef mRNA by TaqMan RT-qPCR on left lung RNA, normalized to Gapdh. Higher in prenatally smoke-exposed offspring (P<0.001 overall; male P<0.001; Fig. 1G/1g). SPDEF is the master transcription factor for goblet cell differentiation in the airway epithelium. Individual values only; no numeric level recorded.

target gene: Spdef gene expression method: TaqMan RT-qPCR normalization reference: Gapdh

Exposure conditions

ConditionAgentConcentrationDuration
Prenatal fresh air - dams exposed to fresh air from 7 days before mating until euthanization; offspring assessed 1 day after birth
EXPOSURE:lkhagvadorj-prenatal-air
— — —
Prenatal cigarette smoke - dams exposed 2 x 50 min/day (10 cigarettes per session, 2R4F) from 7 days before mating throughout pregnancy until euthanization; offspring assessed 1 day after birth and never exposed postnatally
EXPOSURE:lkhagvadorj-prenatal-smoke
exposure to cigarette smoking via maternal
ECTO:0300003
— —

Outputs

GroupOutputDescription
control Spdef mRNA, offspring of air-exposed dams
GE:lkhagvadorj-spdef-neonate-output-control · under EXPOSURE:lkhagvadorj-prenatal-air
treated Spdef mRNA, offspring of smoke-exposed dams
GE:lkhagvadorj-spdef-neonate-output-smoke · under EXPOSURE:lkhagvadorj-prenatal-smoke

Evidence

it resulted in higher expression of mucus-related transcription factors Spdef and Foxm1 in the lung
SUPPORT MODEL ORGANISM PMID:32783621

The abstract states that prenatal smoke exposure raised expression of the mucus-related transcription factor Spdef in the lung, which is the increase this assay's smoke-exposed output records.

GE:lkhagvadorj-foxm1-neonate

Foxm1 mRNA in neonatal lung - prenatal air vs prenatal smoke

Foxm1 mRNA by TaqMan RT-qPCR on left lung RNA, normalized to Gapdh. Higher in prenatally smoke-exposed offspring (P=0.014 overall; male P=0.01, female P=0.04; Fig. 1F/1f). FOXM1 promotes SPDEF activity. Individual values only; no numeric level recorded.

target gene: Foxm1 gene expression method: TaqMan RT-qPCR normalization reference: Gapdh

Exposure conditions

ConditionAgentConcentrationDuration
Prenatal fresh air - dams exposed to fresh air from 7 days before mating until euthanization; offspring assessed 1 day after birth
EXPOSURE:lkhagvadorj-prenatal-air
— — —
Prenatal cigarette smoke - dams exposed 2 x 50 min/day (10 cigarettes per session, 2R4F) from 7 days before mating throughout pregnancy until euthanization; offspring assessed 1 day after birth and never exposed postnatally
EXPOSURE:lkhagvadorj-prenatal-smoke
exposure to cigarette smoking via maternal
ECTO:0300003
— —

Outputs

GroupOutputDescription
control Foxm1 mRNA, offspring of air-exposed dams
GE:lkhagvadorj-foxm1-neonate-output-control · under EXPOSURE:lkhagvadorj-prenatal-air
treated Foxm1 mRNA, offspring of smoke-exposed dams
GE:lkhagvadorj-foxm1-neonate-output-smoke · under EXPOSURE:lkhagvadorj-prenatal-smoke

Evidence

higher expression of mucus-related transcription factors Spdef and Foxm1 in the lung
SUPPORT MODEL ORGANISM PMID:32783621

The abstract names Foxm1 among the mucus-related transcription factors whose expression was higher after prenatal smoke exposure, which is the increase this assay's smoke-exposed output records.

GE:lkhagvadorj-pdpn-neonate

Pdpn mRNA in neonatal lung - prenatal air vs prenatal smoke

Pdpn (AECI marker) mRNA by TaqMan RT-qPCR on left lung RNA, normalized to Gapdh. Lower in prenatally smoke-exposed offspring (P<0.0001 overall; male P=0.04, female P=0.006; Fig. 3C/3c). Notably, the number of PDPN-positive AECI cells itself was NOT changed (Fig. 3B/3b), so the deficit is at the transcript level. Individual values only; no numeric level recorded.

target gene: Pdpn gene expression method: TaqMan RT-qPCR normalization reference: Gapdh

Exposure conditions

ConditionAgentConcentrationDuration
Prenatal fresh air - dams exposed to fresh air from 7 days before mating until euthanization; offspring assessed 1 day after birth
EXPOSURE:lkhagvadorj-prenatal-air
— — —
Prenatal cigarette smoke - dams exposed 2 x 50 min/day (10 cigarettes per session, 2R4F) from 7 days before mating throughout pregnancy until euthanization; offspring assessed 1 day after birth and never exposed postnatally
EXPOSURE:lkhagvadorj-prenatal-smoke
exposure to cigarette smoking via maternal
ECTO:0300003
— —

Outputs

GroupOutputDescription
control Pdpn mRNA, offspring of air-exposed dams
GE:lkhagvadorj-pdpn-neonate-output-control · under EXPOSURE:lkhagvadorj-prenatal-air
treated Pdpn mRNA, offspring of smoke-exposed dams
GE:lkhagvadorj-pdpn-neonate-output-smoke · under EXPOSURE:lkhagvadorj-prenatal-smoke

Evidence

prenatally smoke-exposed offspring had higher numbers of alveolar epithelial type II cells (AECII) and lower expression of the AECI-related Pdpn and Gramd2 markers
SUPPORT MODEL ORGANISM PMID:32783621

The abstract states that expression of the AECI-related Pdpn marker was lower in prenatally smoke-exposed offspring, which is the decrease this assay's smoke-exposed output records.

GE:lkhagvadorj-gramd2-neonate

Gramd2 mRNA in neonatal lung - prenatal air vs prenatal smoke

Gramd2 (AECI marker) mRNA by TaqMan RT-qPCR on left lung RNA, normalized to Gapdh. Lower in prenatally smoke-exposed offspring (P<0.0001 overall; both sexes P<0.001; Fig. 3E/3e). Aqp5 mRNA, another alveolar marker measured in the same panel, was not affected. Individual values only; no numeric level recorded.

target gene: Gramd2 gene expression method: TaqMan RT-qPCR normalization reference: Gapdh

Exposure conditions

ConditionAgentConcentrationDuration
Prenatal fresh air - dams exposed to fresh air from 7 days before mating until euthanization; offspring assessed 1 day after birth
EXPOSURE:lkhagvadorj-prenatal-air
— — —
Prenatal cigarette smoke - dams exposed 2 x 50 min/day (10 cigarettes per session, 2R4F) from 7 days before mating throughout pregnancy until euthanization; offspring assessed 1 day after birth and never exposed postnatally
EXPOSURE:lkhagvadorj-prenatal-smoke
exposure to cigarette smoking via maternal
ECTO:0300003
— —

Outputs

GroupOutputDescription
control Gramd2 mRNA, offspring of air-exposed dams
GE:lkhagvadorj-gramd2-neonate-output-control · under EXPOSURE:lkhagvadorj-prenatal-air
treated Gramd2 mRNA, offspring of smoke-exposed dams
GE:lkhagvadorj-gramd2-neonate-output-smoke · under EXPOSURE:lkhagvadorj-prenatal-smoke

Evidence

lower expression of the AECI-related Pdpn and Gramd2 markers
SUPPORT MODEL ORGANISM PMID:32783621

The abstract names Gramd2 among the AECI-related markers whose expression was lower in prenatally smoke-exposed offspring, which is the decrease this assay's smoke-exposed output records.

GE:lkhagvadorj-aecii-prospc-neonate

pro-SPC-positive AECII cell number in neonatal lung - prenatal air vs prenatal smoke

pro-SPC-positive (AECII) cells quantified morphometrically by IHC and corrected for the total lung tissue area per section. Higher in prenatally smoke-exposed offspring in both sexes (P=0.001 overall; both sexes P<0.05; Fig. 2B/2b). Double staining with Ki67 showed more proliferating (Ki67/SPC-positive) AECII in smoke-exposed neonates (P=0.045), read from the local full text only. Individual values only; no numeric count recorded.

target gene: pro-SPC (Sftpc) gene expression method: immunohistochemistry (morphometric cell counting) normalization reference: total lung tissue area per section

Exposure conditions

ConditionAgentConcentrationDuration
Prenatal fresh air - dams exposed to fresh air from 7 days before mating until euthanization; offspring assessed 1 day after birth
EXPOSURE:lkhagvadorj-prenatal-air
— — —
Prenatal cigarette smoke - dams exposed 2 x 50 min/day (10 cigarettes per session, 2R4F) from 7 days before mating throughout pregnancy until euthanization; offspring assessed 1 day after birth and never exposed postnatally
EXPOSURE:lkhagvadorj-prenatal-smoke
exposure to cigarette smoking via maternal
ECTO:0300003
— —

Outputs

GroupOutputDescription
control pro-SPC+ AECII number, offspring of air-exposed dams
GE:lkhagvadorj-aecii-prospc-neonate-output-control · under EXPOSURE:lkhagvadorj-prenatal-air
treated pro-SPC+ AECII number, offspring of smoke-exposed dams
GE:lkhagvadorj-aecii-prospc-neonate-output-smoke · under EXPOSURE:lkhagvadorj-prenatal-smoke

Evidence

prenatally smoke-exposed offspring had higher numbers of alveolar epithelial type II cells (AECII)
SUPPORT MODEL ORGANISM PMID:32783621

The abstract states that prenatally smoke-exposed offspring had higher numbers of AECII, which is the increase this assay's smoke-exposed output records from pro-SPC staining.

GE:lkhagvadorj-aecii-nkx21-neonate

NKX2.1-positive AECII cell number in neonatal lung - prenatal air vs prenatal smoke

NKX2.1-positive (AECII) cells quantified morphometrically by IHC and corrected for the total lung tissue area per section. Higher in prenatally smoke-exposed offspring (P=0.0005 overall; male P=0.05, female P=0.006; Fig. 2D/2d). This is the second, independent AECII marker supporting the same finding. Individual values only; no numeric count recorded.

target gene: Nkx2.1 gene expression method: immunohistochemistry (morphometric cell counting) normalization reference: total lung tissue area per section

Exposure conditions

ConditionAgentConcentrationDuration
Prenatal fresh air - dams exposed to fresh air from 7 days before mating until euthanization; offspring assessed 1 day after birth
EXPOSURE:lkhagvadorj-prenatal-air
— — —
Prenatal cigarette smoke - dams exposed 2 x 50 min/day (10 cigarettes per session, 2R4F) from 7 days before mating throughout pregnancy until euthanization; offspring assessed 1 day after birth and never exposed postnatally
EXPOSURE:lkhagvadorj-prenatal-smoke
exposure to cigarette smoking via maternal
ECTO:0300003
— —

Outputs

GroupOutputDescription
control NKX2.1+ AECII number, offspring of air-exposed dams
GE:lkhagvadorj-aecii-nkx21-neonate-output-control · under EXPOSURE:lkhagvadorj-prenatal-air
treated NKX2.1+ AECII number, offspring of smoke-exposed dams
GE:lkhagvadorj-aecii-nkx21-neonate-output-smoke · under EXPOSURE:lkhagvadorj-prenatal-smoke

Evidence

Moreover, prenatally smoke-exposed offspring had higher numbers of alveolar epithelial type II cells (AECII) and lower expression of the AECI-related Pdpn and Gramd2 markers.
SUPPORT MODEL ORGANISM PMID:32783621

The abstract's statement that prenatally smoke-exposed offspring had higher numbers of AECII is what this assay's smoke-exposed output records using the NKX2.1 marker.

GE:lkhagvadorj-aecii-prospc-organoid

pro-SPC-positive AECII cell number in alveolar lung organoids - non-treated vs AREG

pro-SPC-positive (AECII) cells counted manually in alveolar mouse lung organoids after 14 days (double IF with PDPN) and corrected for the total number of alveolar epithelial cells. More pro-SPC-positive cells in AREG-treated than in non-treated alveolar organoids (P=0.03, Fig. 5G); PDPN-positive AECI numbers were unaffected (Fig. 5H). Individual values only; no numeric count recorded.

target gene: pro-SPC (Sftpc) gene expression method: immunofluorescence (manual cell counting) normalization reference: total number of alveolar epithelial cells in the organoid

Exposure conditions

ConditionAgentConcentrationDuration
Non-treated mouse lung organoids, 14 days of culture
EXPOSURE:lkhagvadorj-organoid-untreated
— — 14 day
AREG 10 ng/mL refreshed every 2 days for 14 days in mouse lung organoids
EXPOSURE:lkhagvadorj-organoid-areg
— 10 nanogram per milliliter 14 day

Outputs

GroupOutputDescription
control pro-SPC+ AECII number, non-treated alveolar organoids
GE:lkhagvadorj-aecii-prospc-organoid-output-control · under EXPOSURE:lkhagvadorj-organoid-untreated
treated pro-SPC+ AECII number, AREG-treated alveolar organoids
GE:lkhagvadorj-aecii-prospc-organoid-output-areg · under EXPOSURE:lkhagvadorj-organoid-areg

Evidence

In alveolar organoids, AREG treatment led to more AECII cells than non-treated AECII cells.
SUPPORT MODEL ORGANISM PMID:32783621

The abstract states the organoid result this assay records: AREG treatment increased AECII cell numbers relative to non-treated alveolar organoids.

GE:lkhagvadorj-basal-krt5-organoid

KRT5-positive basal cell number in bronchiolar lung organoids - non-treated vs AREG

KRT5-positive (basal) cells counted in whole bronchiolar mouse lung organoids after 14 days (triple IF with tubulin and CC10) and corrected for the total number of bronchial epithelial cells. Higher numbers of KRT5-positive cells in AREG-treated than in non-treated organoids (P=0.02, Fig. 5C); CC10-positive club cell numbers were unaffected (Fig. 5E). Individual values only; no numeric count recorded.

target gene: Krt5 gene expression method: immunofluorescence (manual cell counting) normalization reference: total number of bronchial epithelial cells in the organoid

Exposure conditions

ConditionAgentConcentrationDuration
Non-treated mouse lung organoids, 14 days of culture
EXPOSURE:lkhagvadorj-organoid-untreated
— — 14 day
AREG 10 ng/mL refreshed every 2 days for 14 days in mouse lung organoids
EXPOSURE:lkhagvadorj-organoid-areg
— 10 nanogram per milliliter 14 day

Outputs

GroupOutputDescription
control KRT5+ basal cell number, non-treated bronchiolar organoids
GE:lkhagvadorj-basal-krt5-organoid-output-control · under EXPOSURE:lkhagvadorj-organoid-untreated
treated KRT5+ basal cell number, AREG-treated bronchiolar organoids
GE:lkhagvadorj-basal-krt5-organoid-output-areg · under EXPOSURE:lkhagvadorj-organoid-areg

Evidence

AREG treatment resulted in fewer ciliated cells and more basal cells when compared with non-treated bronchiolar organoids
SUPPORT MODEL ORGANISM PMID:32783621

The abstract states that AREG treatment produced more basal cells than non-treated bronchiolar organoids, which is the increase this assay's AREG-treated output records from KRT5 staining.

EGFR signaling assays

EGFR:lkhagvadorj-areg-neonate

AREG expression in neonatal lung - prenatal air vs prenatal smoke

Two readouts of the EGFR ligand amphiregulin in 1-day-old offspring: (1) AREG-expressing cells by IHC, found mainly in the lung parenchyma, higher in prenatally smoke-exposed offspring (P=0.04 overall, most pronounced in females P=0.012; Fig. 4B/4b); (2) Areg mRNA by TaqMan RT-qPCR on left lung RNA, higher in smoke-exposed offspring in both sexes (P=0.0014 overall; both sexes P<0.05; Fig. 4C/4c). Egfr mRNA itself was NOT changed by prenatal smoke exposure (Fig. 4E/4e), so the paper's inference of increased EGFR signalling rests on ligand availability (more AREG, less EGF) rather than on any direct measure of EGFR phosphorylation, which was not assayed. Individual values only; no numeric level recorded.

normalization reference: Gapdh (mRNA); total lung tissue area per section (AREG+ cells)

Exposure conditions

ConditionAgentConcentrationDuration
Prenatal fresh air - dams exposed to fresh air from 7 days before mating until euthanization; offspring assessed 1 day after birth
EXPOSURE:lkhagvadorj-prenatal-air
— — —
Prenatal cigarette smoke - dams exposed 2 x 50 min/day (10 cigarettes per session, 2R4F) from 7 days before mating throughout pregnancy until euthanization; offspring assessed 1 day after birth and never exposed postnatally
EXPOSURE:lkhagvadorj-prenatal-smoke
exposure to cigarette smoking via maternal
ECTO:0300003
— —

Outputs

GroupOutputDescription
control AREG expression, offspring of air-exposed dams
EGFR:lkhagvadorj-areg-neonate-output-control · under EXPOSURE:lkhagvadorj-prenatal-air
treated AREG expression, offspring of smoke-exposed dams
EGFR:lkhagvadorj-areg-neonate-output-smoke · under EXPOSURE:lkhagvadorj-prenatal-smoke

Evidence

This was accompanied by higher expression of Areg and lower expression of Egf in prenatally smoke-exposed offspring.
SUPPORT MODEL ORGANISM PMID:32783621

The abstract states that Areg expression was higher in prenatally smoke-exposed offspring, which is the increase in EGFR ligand expression this assay's smoke-exposed output records.

EGFR:lkhagvadorj-egf-neonate

Egf mRNA in neonatal lung - prenatal air vs prenatal smoke

Egf mRNA by TaqMan RT-qPCR on left lung RNA of 1-day-old offspring, normalized to Gapdh. Lower in prenatally smoke-exposed offspring (P=0.0018 overall; male P=0.02; Fig. 4D/4d). EGF has a higher affinity for EGFR than AREG and is associated with epithelial cell differentiation, so the paper reads lower Egf alongside higher Areg as a shift in which ligand drives EGFR. Individual values only; no numeric level recorded.

normalization reference: Gapdh

Exposure conditions

ConditionAgentConcentrationDuration
Prenatal fresh air - dams exposed to fresh air from 7 days before mating until euthanization; offspring assessed 1 day after birth
EXPOSURE:lkhagvadorj-prenatal-air
— — —
Prenatal cigarette smoke - dams exposed 2 x 50 min/day (10 cigarettes per session, 2R4F) from 7 days before mating throughout pregnancy until euthanization; offspring assessed 1 day after birth and never exposed postnatally
EXPOSURE:lkhagvadorj-prenatal-smoke
exposure to cigarette smoking via maternal
ECTO:0300003
— —

Outputs

GroupOutputDescription
control Egf mRNA, offspring of air-exposed dams
EGFR:lkhagvadorj-egf-neonate-output-control · under EXPOSURE:lkhagvadorj-prenatal-air
treated Egf mRNA, offspring of smoke-exposed dams
EGFR:lkhagvadorj-egf-neonate-output-smoke · under EXPOSURE:lkhagvadorj-prenatal-smoke

Evidence

higher expression of Areg and lower expression of Egf in prenatally smoke-exposed offspring
SUPPORT MODEL ORGANISM PMID:32783621

The abstract states that Egf expression was lower in prenatally smoke-exposed offspring, which is the decrease in this competing EGFR ligand that the assay's smoke-exposed output records.

Response comparisons

COMP:lkhagvadorj-ciliated-cells-neonate

Ciliated cell number, prenatal smoke vs prenatal air (neonatal lung)

Paper reports P<0.001 for the pooled comparison (and P<0.0001 in each sex separately) without an exact value; the tabulated p_value 0.001 is therefore the stated upper bound, not an exact figure. No magnitude of change is reported.

measurement: percentage_ciliated_cells direction: decreased derivation: reported in paper from assay: CIL:lkhagvadorj-ciliated-cells-neonate

Statistical test: two-tailed Mann-Whitney U test

COMP:lkhagvadorj-foxj1-neonate

Foxj1 mRNA, prenatal smoke vs prenatal air (neonatal lung)

Paper reports P=0.03 for the pooled comparison (male P=0.04). No magnitude of change is reported.

measurement: foxj1_mrna_expression direction: decreased derivation: reported in paper from assay: FOXJ:lkhagvadorj-foxj1-neonate

Statistical test: two-tailed Mann-Whitney U test

COMP:lkhagvadorj-spdef-neonate

Spdef mRNA, prenatal smoke vs prenatal air (neonatal lung)

Paper reports P<0.001 without an exact value; the tabulated p_value 0.001 is the stated upper bound. No magnitude of change is reported.

measurement: mrna_level direction: increased derivation: reported in paper from assay: GE:lkhagvadorj-spdef-neonate

Statistical test: two-tailed Mann-Whitney U test

COMP:lkhagvadorj-foxm1-neonate

Foxm1 mRNA, prenatal smoke vs prenatal air (neonatal lung)

Paper reports P=0.014 for the pooled comparison (male P=0.01, female P=0.04). No magnitude of change is reported.

measurement: mrna_level direction: increased derivation: reported in paper from assay: GE:lkhagvadorj-foxm1-neonate

Statistical test: two-tailed Mann-Whitney U test

COMP:lkhagvadorj-pdpn-neonate

Pdpn mRNA, prenatal smoke vs prenatal air (neonatal lung)

Paper reports P<0.0001 without an exact value; the tabulated p_value 0.0001 is the stated upper bound. No magnitude of change is reported. The number of PDPN+ AECI cells was unchanged.

measurement: mrna_level direction: decreased derivation: reported in paper from assay: GE:lkhagvadorj-pdpn-neonate

Statistical test: two-tailed Mann-Whitney U test

COMP:lkhagvadorj-gramd2-neonate

Gramd2 mRNA, prenatal smoke vs prenatal air (neonatal lung)

Paper reports P<0.0001 without an exact value; the tabulated p_value 0.0001 is the stated upper bound. No magnitude of change is reported.

measurement: mrna_level direction: decreased derivation: reported in paper from assay: GE:lkhagvadorj-gramd2-neonate

Statistical test: two-tailed Mann-Whitney U test

COMP:lkhagvadorj-aecii-prospc-neonate

pro-SPC+ AECII number, prenatal smoke vs prenatal air (neonatal lung)

Paper reports P=0.001 for the pooled comparison (both sexes P<0.05). No magnitude of change is reported.

measurement: percentage_positive_cells direction: increased derivation: reported in paper from assay: GE:lkhagvadorj-aecii-prospc-neonate

Statistical test: two-tailed Mann-Whitney U test

COMP:lkhagvadorj-aecii-nkx21-neonate

NKX2.1+ AECII number, prenatal smoke vs prenatal air (neonatal lung)

Paper reports P=0.0005 for the pooled comparison (male P=0.05, female P=0.006). No magnitude of change is reported.

measurement: percentage_positive_cells direction: increased derivation: reported in paper from assay: GE:lkhagvadorj-aecii-nkx21-neonate

Statistical test: two-tailed Mann-Whitney U test

COMP:lkhagvadorj-areg-neonate

Areg mRNA, prenatal smoke vs prenatal air (neonatal lung)

Paper reports P=0.0014 for Areg mRNA in the pooled comparison (both sexes P<0.05); the number of AREG-expressing cells by IHC was higher at P=0.04 (female P=0.012). No magnitude of change is reported.

measurement: egfr_ligand_expression direction: increased derivation: reported in paper from assay: EGFR:lkhagvadorj-areg-neonate

Statistical test: two-tailed Mann-Whitney U test

COMP:lkhagvadorj-egf-neonate

Egf mRNA, prenatal smoke vs prenatal air (neonatal lung)

Paper reports P=0.0018 for the pooled comparison (male P=0.02). No magnitude of change is reported.

measurement: egfr_ligand_expression direction: decreased derivation: reported in paper from assay: EGFR:lkhagvadorj-egf-neonate

Statistical test: two-tailed Mann-Whitney U test

COMP:lkhagvadorj-ciliated-cells-organoid

Tubulin+ ciliated cell number, AREG vs non-treated (bronchiolar organoids)

Paper reports P<0.001 without an exact value; the tabulated p_value 0.001 is the stated upper bound. No magnitude of change is reported.

measurement: percentage_ciliated_cells direction: decreased derivation: reported in paper from assay: CIL:lkhagvadorj-ciliated-cells-organoid

Statistical test: two-tailed Mann-Whitney U test

COMP:lkhagvadorj-basal-krt5-organoid

KRT5+ basal cell number, AREG vs non-treated (bronchiolar organoids)

Paper reports P=0.02. No magnitude of change is reported.

measurement: percentage_positive_cells direction: increased derivation: reported in paper from assay: GE:lkhagvadorj-basal-krt5-organoid

Statistical test: two-tailed Mann-Whitney U test

COMP:lkhagvadorj-aecii-prospc-organoid

pro-SPC+ AECII number, AREG vs non-treated (alveolar organoids)

Paper reports P=0.03. No magnitude of change is reported.

measurement: percentage_positive_cells direction: increased derivation: reported in paper from assay: GE:lkhagvadorj-aecii-prospc-organoid

Statistical test: two-tailed Mann-Whitney U test

Key-event relationships

KER:lkhagvadorj-egfr-to-ciliogenesis

EGFR activation leads to altered ciliogenesis

EGFR activation (activated) → directly leads to → Altered ciliogenesis (decreased) moderate support

AREG treatment of bronchiolar lung organoids reduced tubulin-positive ciliated cell numbers, reproducing the ciliated cell loss and Foxj1 downregulation seen in prenatally smoke-exposed neonates that had higher Areg and lower Egf expression.

In bronchial organoids, AREG treatment resulted in fewer ciliated cells and more basal cells when compared with non-treated bronchiolar organoids.
SUPPORT MODEL ORGANISM PMID:32783621

Applying the EGFR ligand AREG directly to organoids reduced ciliated cell numbers, which is the upstream-to-downstream link this relationship asserts.

KER:lkhagvadorj-egfr-to-basal-hyperplasia

EGFR activation leads to basal cell hyperplasia

EGFR activation (activated) → directly leads to → Basal cell hyperplasia (increased) moderate support

AREG treatment of bronchiolar lung organoids increased KRT5-positive basal cell numbers (P=0.02), applying the EGFR ligand directly and so establishing the link on this paper's own evidence.

AREG treatment resulted in fewer ciliated cells and more basal cells when compared with non-treated bronchiolar organoids
SUPPORT MODEL ORGANISM PMID:32783621

Direct AREG treatment increased basal cell numbers in bronchiolar organoids, which is the upstream-to-downstream link this relationship asserts.

KER:lkhagvadorj-egfr-to-aecii-hyperplasia

EGFR activation leads to alveolar epithelial type II cell hyperplasia

AREG treatment of alveolar lung organoids increased pro-SPC-positive AECII numbers (P=0.03), reproducing the higher AECII numbers found in prenatally smoke-exposed neonates.

In alveolar organoids, AREG treatment led to more AECII cells than non-treated AECII cells.
SUPPORT MODEL ORGANISM PMID:32783621

Direct AREG treatment increased AECII numbers in alveolar organoids, which is the upstream-to-downstream link this relationship asserts.

KER:lkhagvadorj-egfr-to-mucus-metaplasia

EGFR activation leads to mucus secretory program activation

Prenatally smoke-exposed neonates with higher Areg and lower Egf expression showed higher expression of the mucus-related transcription factors Spdef and Foxm1. The organoid arm did not test the secretory program directly, so this link rests on the neonatal co-occurrence rather than on an AREG intervention.

Taken together, the observed impaired bronchial and alveolar cell development in prenatally smoke-exposed neonatal offspring may be induced by increased AREG-EGFR signaling.
SUPPORT MODEL ORGANISM PMID:32783621

The authors' own summary attributes the bronchial differentiation changes, which include the higher Spdef and Foxm1 expression, to increased AREG-EGFR signaling, and its hedged wording is why this relationship is recorded as weak support.

KER:lkhagvadorj-egfr-to-impaired-aeci

EGFR activation leads to impaired alveolar epithelial type I cell differentiation

Prenatally smoke-exposed neonates with higher Areg and lower Egf expression showed lower Pdpn and Gramd2 mRNA, although PDPN-positive AECI cell numbers were unchanged and AREG treatment of alveolar organoids did not change PDPN-positive cell numbers either. The link is therefore transcript-level only and untested by intervention.

the observed impaired bronchial and alveolar cell development in prenatally smoke-exposed neonatal offspring may be induced by increased AREG-EGFR signaling
SUPPORT MODEL ORGANISM PMID:32783621

The authors attribute the impaired alveolar cell development, which includes the lower AECI-related Pdpn and Gramd2 expression, to increased AREG-EGFR signaling, and the hedged wording is why this relationship is recorded as weak support.

Protocols

PROTOCOL:lkhagvadorj-smoke-001

Maternal cigarette smoke exposure (prenatal window)

Mainstream cigarette smoke generated with a TE-10 smoke exposure system (Teague Enterprises, Woodland, CA) using Kentucky 2R4F research-reference filtered cigarettes. Two sessions of 50 min per day with a 3-h interval between exposures; smoke of 10 cigarettes generated per session. Adaptation: 3 cigarettes/session on day 1, 5 on day 2, 7 on day 3, 10 from day 4 onward. Per session this generated total particulate matter of 211 +/- 30 mg/m3 and a CO level of 205 +/- 35 parts per million (max 241 ppm). Dams were exposed from 7 days before mating until the day of euthanization, constant throughout pregnancy; mothers and offspring were not exposed after birth. Simultaneous cycling induced with 1.25 IU pregnant mare's serum gonadotropin and 1.25 IU human chorionic gonadotrophin; mating confirmed by vaginal plug detection. Approved by the IACUC of the University of Groningen (Permit No. 6589a).

Equipment: TE-10 smoke exposure system (Teague Enterprises, Woodland, CA); Kentucky 2R4F research-reference filtered cigarettes (The Tobacco Research Institute, University of Kentucky)

PROTOCOL:lkhagvadorj-ihc-001

Immunohistochemistry on neonatal lung tissue

3 um sections of formalin-fixed, paraffin-embedded right lung. Deparaffinized, antigen retrieval in citrate (pH 6.0) and Tris-HCl (pH 7.4) buffer in a microwave oven for 15 min, then 0.3% H2O2 in PBS for 30 min. Primary antibodies against tubulin (ciliated cells), CC10 (club cells), pro-SPC and NKX2.1 (AECII), PDPN (AECI), Ki67 (proliferation) and amphiregulin. Detection with HRP enzyme and biotinylated secondary antibodies (30 min), colour reaction with 0.05% diaminobenzidine (DAB) and 3-amino-9-ethylcarbazole (AEC). Slides were coded and examiners blinded to groups. Tubulin+ and CC10+ cells counted manually in all airways and corrected per millimetre of airway; pro-SPC+, NKX2.1+, AREG+, PDPN+ and pro-SPC/Ki67+ cells quantified morphometrically and corrected for the total lung tissue area per section.

Equipment: Aperio-ImageScope viewing software (Aperio 11.2.0.780, Vista, CA); TissueFAXS imaging system (TissueGnostics, Austria); ImageJ

PROTOCOL:lkhagvadorj-qpcr-001

TaqMan RT-qPCR on neonatal lung tissue

Total RNA isolated from left lung with an RNA isolation TRIzol Kit (Invitrogen); cDNA reverse transcribed with SuperScript-II Reverse Transcriptase (Invitrogen). TaqMan on-demand gene expression assays (Applied Biosystems) for Gapdh (Mm99999915_g1), Foxj1 (Mm01267279_m1), Scgb1a1 (Mm00442046_m1), Foxm1 (Mm00514924_m1), Spdef (Mm00600221_m1), Pdpn (Mm00447558_m1), Aqp5 (Mm00437578_m1), Gramd2 (Mm01174485_m1), Nkx2.1, Egf (Mm00438696_m1), Areg (Mm01354339_m1) and Egfr (Mm01187858_m1). Reactions in triplicate, 10 uL total (2 uL MilliQ water, 5 uL PCR MasterMix (Eurogentec), 0.5 uL assay mix, 2.5 uL cDNA), run on a LightCycler 480 Real-Time PCR System (Roche) and analysed with LightCycler 480 SW 1.5 software using the fit points method. Normalized to Gapdh by 2^-dCp; undetectable Cp values (>40) were interpreted as the maximum Cp value.

Equipment: LightCycler 480 Real-Time PCR System (Roche, Basel, Switzerland); TaqMan Gene Expression Assays (Applied Biosystems, Foster City, CA); TRIzol RNA isolation kit (Invitrogen)

PROTOCOL:lkhagvadorj-organoid-001

Three-dimensional mouse lung organoid culture with AREG treatment

EpCAM+ cells isolated from lungs of pathogen-free male (n=3) and female (n=2) mice aged 8-12 wk. Approximately 10,000 EpCAM+ lung cells seeded with an equal number of fibroblasts per insert in 100 uL growth factor-reduced Matrigel diluted 1:1 with DMEM/F12 containing 5% FBS, into transwell inserts for 24 wells. In the treated groups AREG (10 ng/mL; R&D Systems, Minneapolis) was freshly added every 2 days. Cultures maintained at 37C in a humidified incubator with 5% CO2. After 14 days organoids were fixed in acetone diluted 1:1 (vol/vol) with methanol for 15 min at -20C. For bronchial analyses organoids were stabilized in 2% agarose, dehydrated and paraffin-embedded for cross-sectional histology.

Equipment: Growth factor-reduced Matrigel; Transwell inserts for 24 wells; Recombinant AREG (R&D Systems, Minneapolis)

PROTOCOL:lkhagvadorj-if-001

Immunofluorescence on lung organoids

Paraffin-embedded bronchiolar organoids double- or triple-stained with primary antibodies against KRT5 (basal cell), CC10 (club cell) and tubulin (ciliated cell), visualized with fluorescent secondary antibodies and DAPI-containing mounting medium (Abcam). Alveolar organoid cultures washed with PBS, blocked in PBS with 5% (wt/vol) BSA, incubated overnight at 4C with primary antibodies against pro-SPC (AECII) and PDPN (AECI) diluted in PBS with 0.1% BSA and 0.1% Triton, washed 30 min and detected with fluorescent secondary antibodies and DAPI. Slides scanned on the TissueFAXS imaging system; images acquired on a Leica SP8 confocal microscope and a Leica 4000b microscope at x40 magnification. Positive cells counted manually and corrected for the total number of bronchial and alveolar epithelial cells in the organoids.

Equipment: Leica SP8 confocal microscope; Leica 4000b microscope; TissueFAXS imaging system (TissueGnostics, Austria); ImageJ