zebrafish-toxicology-atlas-schema

Schema to represent metadata associated with the Zebrafish Toxicology Atlas

URI: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema

Name: zebrafish-toxicology-atlas-schema

Classes

Class	Description
Annotation	Root class for entity annotations.
QuantityValue	A value of an attribute that is quantitative and measurable, expressed as a combination of a unit and a numeric value
Concentration	The concentration of a chemical.
FishExposureOutcome	A representation of the phenotype observed in the fish as a result of exposure.
NamedThing	A named entity.
Allele	A representation of the genetic background of the fish.
ChemicalEntity	A chemical compound used as a toxicant in the study.
DevelopmentalStage	A zebrafish developmental stage.
ExposureEvent	An instance of a toxicological exposure event in the study. According to ECTO, an exposure
Fish	A representation of the zebrafish used in the toxicology study.
Gene	A representation of a gene.
Phenotype	A phenotype observed in the fish as a result of exposure.

Slot	Description
allele	The allele present in a fish
background	The genetic background of the fish
concentration	The concentration of the toxicant
duration	The duration of the exposure
end_stage	The stage at which exposure ends
exposure_event	The exposure event
exposure_substance	The substance used in the exposure
exposure_type	The exposure type
fish	The fish exposed to the toxicant
frequency	The frequency of the exposure
gene	The gene associated with the allele
has_numeric_value	The numeric value of the quantity value
has_unit	The unit of the quantity value
id
name	Name or label of an entity
outcome	An outcome is a list of the observed phenotypes in the fish exposed to the to...
start_stage	The stage at which exposure starts
symbol	The symbol of the NamedThing
treated_with	The chemical used in the exposure
variation_type	The variation_type of the allele
zygosity	The zygosity of the fish

Enumeration	Description
ExposureTypeEnum	An enumeration of exposure types derived from the ECTO ontology

Type	Description
Boolean	A binary (true or false) value
Curie	a compact URI
Date	a date (year, month and day) in an idealized calendar
DateOrDatetime	Either a date or a datetime
Datetime	The combination of a date and time
Decimal	A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double	A real number that conforms to the xsd:double specification
Float	A real number that conforms to the xsd:float specification
Integer	An integer
Jsonpath	A string encoding a JSON Path
Jsonpointer	A string encoding a JSON Pointer
Ncname	Prefix part of CURIE
Nodeidentifier	A URI, CURIE or BNODE that represents a node in a model
Objectidentifier	A URI or CURIE that represents an object in the model
Sparqlpath	A string encoding a SPARQL Property Path
String	A character string
Time	A time object represents a (local) time of day, independent of any particular...
Uri	a complete URI
Uriorcurie	a URI or a CURIE

Subset	Description