zebrafish-toxicology-atlas-schema
Schema to represent metadata associated with the Zebrafish Toxicology Atlas
URI: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
Name: zebrafish-toxicology-atlas-schema
Classes
| Class |
Description |
| Annotation |
Root class for entity annotations. |
| QuantityValue |
A value of an attribute that is quantitative and measurable, expressed as a combination of a unit and a numeric value |
| Concentration |
The amount of a chemical introduced as part of the exposure or experimental treatment. |
| FishExposureOutcome |
A representation of the phenotype observed in the fish as a result of exposure. |
| NamedThing |
A named entity. |
| Allele |
A representation of the genetic background of the fish. |
| ChemicalEntity |
A chemical compound used as a toxicant in the exposure or experimental treatment. |
| DevelopmentalStage |
The specific phase in the zebrafish's developmental process. |
| ExposureEvent |
An instance of a toxicological exposure event in the study. According to ECTO, an exposure |
| Fish |
A representation of the zebrafish used in the toxicology study. |
| Gene |
A representation of a gene. |
| Phenotype |
A phenotype observed in the fish as a result of exposure in an experimental treatment. |
Slots
| Slot |
Description |
| allele |
The allele present in a fish |
| background |
The genetic background of the fish |
| concentration |
The concentration of the toxicant |
| duration |
The duration of the exposure |
| end_stage |
The developmental stage of the fish at the end of the exposure or experimenta... |
| exposure_event |
The exposure event |
| exposure_substance |
The substance used in the exposure |
| exposure_type |
The exposure type |
| fish |
The fish exposed to the toxicant |
| frequency |
The frequency of the exposure |
| gene |
The gene associated with the allele |
| has_numeric_value |
The numeric value of the quantity value |
| has_unit |
The unit of the quantity value |
| id |
|
| name |
Name or label of an entity |
| outcome |
An outcome is a list of the observed phenotypes in the fish exposed to the to... |
| start_stage |
The developmental stage of the fish at the beginning of the exposure or exper... |
| symbol |
The symbol of the NamedThing |
| treated_with |
The chemical used in the exposure |
| variation_type |
The variation_type of the allele |
| zygosity |
The zygosity of the fish |
Enumerations
| Enumeration |
Description |
| ExposureTypeEnum |
An enumeration of exposure types derived from the ECTO ontology |
Types
| Type |
Description |
| Boolean |
A binary (true or false) value |
| Curie |
a compact URI |
| Date |
a date (year, month and day) in an idealized calendar |
| DateOrDatetime |
Either a date or a datetime |
| Datetime |
The combination of a date and time |
| Decimal |
A real number with arbitrary precision that conforms to the xsd:decimal speci... |
| Double |
A real number that conforms to the xsd:double specification |
| Float |
A real number that conforms to the xsd:float specification |
| Integer |
An integer |
| Jsonpath |
A string encoding a JSON Path |
| Jsonpointer |
A string encoding a JSON Pointer |
| Ncname |
Prefix part of CURIE |
| Nodeidentifier |
A URI, CURIE or BNODE that represents a node in a model |
| Objectidentifier |
A URI or CURIE that represents an object in the model |
| Sparqlpath |
A string encoding a SPARQL Property Path |
| String |
A character string |
| Time |
A time object represents a (local) time of day, independent of any particular... |
| Uri |
a complete URI |
| Uriorcurie |
a URI or a CURIE |
Subsets