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Class: Allele

A representation of the genetic background of the fish.

URI: zebrafish_toxicology_atlas_schema:Allele

classDiagram class Allele click Allele href "../Allele" NamedThing <|-- Allele click NamedThing href "../NamedThing" Allele : gene Allele --> "0..1" Gene : gene click Gene href "../Gene" Allele : id Allele : name Allele : variation_type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
name 0..1
String		 Name of the allele direct
gene 0..1
Gene		 The gene associated with the allele direct
variation_type 0..1
String		 The variation_type of the allele direct
id 1
String		 ZFIN identifier for the allele NamedThing

Usages

used by used in type used
Fish allele range Allele

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema

Mappings

Mapping Type Mapped Value
self zebrafish_toxicology_atlas_schema:Allele
native zebrafish_toxicology_atlas_schema:Allele

LinkML Source

Direct

name: Allele
description: A representation of the genetic background of the fish.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: NamedThing
slots:
- name
- gene
- variation_type
slot_usage:
  id:
    name: id
    description: ZFIN identifier for the allele.
    pattern: ^ZFIN:ZDB-GENO-\d{6}-\d$
  name:
    name: name
    description: Name of the allele.

Induced

name: Allele
description: A representation of the genetic background of the fish.
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
is_a: NamedThing
slot_usage:
  id:
    name: id
    description: ZFIN identifier for the allele.
    pattern: ^ZFIN:ZDB-GENO-\d{6}-\d$
  name:
    name: name
    description: Name of the allele.
attributes:
  name:
    name: name
    description: Name of the allele.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: name
    owner: Allele
    domain_of:
    - NamedThing
    - Allele
    - Gene
    - ChemicalEntity
    - DevelopmentalStage
    range: string
  gene:
    name: gene
    description: The gene associated with the allele.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: gene
    owner: Allele
    domain_of:
    - Allele
    range: Gene
  variation_type:
    name: variation_type
    description: The variation_type of the allele.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: variation_type
    owner: Allele
    domain_of:
    - Allele
    range: string
  id:
    name: id
    description: ZFIN identifier for the allele.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    identifier: true
    alias: id
    owner: Allele
    domain_of:
    - NamedThing
    range: string
    required: true
    pattern: ^ZFIN:ZDB-GENO-\d{6}-\d$