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Class: ExposureEvent

An instance of a toxicological exposure event in the study. According to ECTO, an exposure

URI: zebrafish_toxicology_atlas_schema:ExposureEvent

classDiagram class ExposureEvent click ExposureEvent href "../ExposureEvent" NamedThing <|-- ExposureEvent click NamedThing href "../NamedThing" ExposureEvent : concentration ExposureEvent --> "0..1" Concentration : concentration click Concentration href "../Concentration" ExposureEvent : duration ExposureEvent --> "0..1" QuantityValue : duration click QuantityValue href "../QuantityValue" ExposureEvent : end_stage ExposureEvent --> "0..1" DevelopmentalStage : end_stage click DevelopmentalStage href "../DevelopmentalStage" ExposureEvent : exposure_substance ExposureEvent --> "0..1" ChemicalEntity : exposure_substance click ChemicalEntity href "../ChemicalEntity" ExposureEvent : exposure_type ExposureEvent --> "0..1" ExposureTypeEnum : exposure_type click ExposureTypeEnum href "../ExposureTypeEnum" ExposureEvent : frequency ExposureEvent --> "0..1" QuantityValue : frequency click QuantityValue href "../QuantityValue" ExposureEvent : id ExposureEvent : name ExposureEvent : start_stage ExposureEvent --> "0..1" DevelopmentalStage : start_stage click DevelopmentalStage href "../DevelopmentalStage"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
exposure_substance 0..1
ChemicalEntity		 The chemical substance used in the exposure or experimental treatment direct
exposure_type 0..1
ExposureTypeEnum		 The exposure type direct
concentration 0..1
Concentration		 The concentration of the chemical used in the exposure or experimental treatm... direct
start_stage 0..1
DevelopmentalStage		 The developmental stage of the fish at the beginning of the exposure or exper... direct
end_stage 0..1
DevelopmentalStage		 The developmental stage of the fish at the end of the exposure or experimenta... direct
duration 0..1
QuantityValue		 The duration of the exposure direct
frequency 0..1
QuantityValue		 The frequency of the exposure direct
id 1
String		 Unique identifier for the entity NamedThing
name 0..1
String		 Name or label of the entity NamedThing

Usages

used by used in type used
FishExposureOutcome exposure_event range ExposureEvent

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema

Mappings

Mapping Type Mapped Value
self zebrafish_toxicology_atlas_schema:ExposureEvent
native zebrafish_toxicology_atlas_schema:ExposureEvent
exact biolink:ExposureEvent

LinkML Source

Direct

name: ExposureEvent
description: An instance of a toxicological exposure event in the study.  According
  to ECTO,  an exposure
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
exact_mappings:
- biolink:ExposureEvent
is_a: NamedThing
slots:
- exposure_substance
- exposure_type
- concentration
- start_stage
- end_stage
- duration
- frequency
slot_usage:
  exposure_substance:
    name: exposure_substance
    description: The chemical substance used in the exposure or experimental treatment.
    comments:
    - '# TODO: as Sabrina these questions: Will all exposures be chemicals represented
      by ChEBI (e.g., what about complex mixtures/drugs)? Will all exposures be toxic?'
    range: ChemicalEntity
  concentration:
    name: concentration
    description: The concentration of the chemical used in the exposure or experimental
      treatment.
    range: Concentration
  start_stage:
    name: start_stage
    description: The developmental stage of the fish at the beginning of the exposure
      or experimental treatment.
    range: DevelopmentalStage
  end_stage:
    name: end_stage
    description: The developmental stage of the fish at the end of the exposure or
      experimental treatment.
    range: DevelopmentalStage

Induced

name: ExposureEvent
description: An instance of a toxicological exposure event in the study.  According
  to ECTO,  an exposure
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
exact_mappings:
- biolink:ExposureEvent
is_a: NamedThing
slot_usage:
  exposure_substance:
    name: exposure_substance
    description: The chemical substance used in the exposure or experimental treatment.
    comments:
    - '# TODO: as Sabrina these questions: Will all exposures be chemicals represented
      by ChEBI (e.g., what about complex mixtures/drugs)? Will all exposures be toxic?'
    range: ChemicalEntity
  concentration:
    name: concentration
    description: The concentration of the chemical used in the exposure or experimental
      treatment.
    range: Concentration
  start_stage:
    name: start_stage
    description: The developmental stage of the fish at the beginning of the exposure
      or experimental treatment.
    range: DevelopmentalStage
  end_stage:
    name: end_stage
    description: The developmental stage of the fish at the end of the exposure or
      experimental treatment.
    range: DevelopmentalStage
attributes:
  exposure_substance:
    name: exposure_substance
    description: The chemical substance used in the exposure or experimental treatment.
    comments:
    - '# TODO: as Sabrina these questions: Will all exposures be chemicals represented
      by ChEBI (e.g., what about complex mixtures/drugs)? Will all exposures be toxic?'
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: exposure_substance
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: ChemicalEntity
  exposure_type:
    name: exposure_type
    description: The exposure type.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: exposure_type
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: ExposureTypeEnum
  concentration:
    name: concentration
    description: The concentration of the chemical used in the exposure or experimental
      treatment.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: concentration
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: Concentration
  start_stage:
    name: start_stage
    description: The developmental stage of the fish at the beginning of the exposure
      or experimental treatment.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: start_stage
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: DevelopmentalStage
  end_stage:
    name: end_stage
    description: The developmental stage of the fish at the end of the exposure or
      experimental treatment.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: end_stage
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: DevelopmentalStage
  duration:
    name: duration
    description: The duration of the exposure.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: duration
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: QuantityValue
  frequency:
    name: frequency
    description: The frequency of the exposure.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: frequency
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: QuantityValue
  id:
    name: id
    description: Unique identifier for the entity.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    identifier: true
    alias: id
    owner: ExposureEvent
    domain_of:
    - NamedThing
    range: string
    required: true
  name:
    name: name
    description: Name or label of the entity.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: name
    owner: ExposureEvent
    domain_of:
    - NamedThing
    - Allele
    - Gene
    - ChemicalEntity
    - DevelopmentalStage
    range: string