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Class: ExposureEvent

An instance of a toxicological exposure event in the study. According to ECTO, an exposure

URI: zebrafish_toxicology_atlas_schema:ExposureEvent

classDiagram class ExposureEvent click ExposureEvent href "../ExposureEvent" NamedThing <|-- ExposureEvent click NamedThing href "../NamedThing" ExposureEvent : concentration ExposureEvent --> "0..1" Concentration : concentration click Concentration href "../Concentration" ExposureEvent : duration ExposureEvent --> "0..1" QuantityValue : duration click QuantityValue href "../QuantityValue" ExposureEvent : end_stage ExposureEvent --> "0..1" DevelopmentalStage : end_stage click DevelopmentalStage href "../DevelopmentalStage" ExposureEvent : exposure_substance ExposureEvent --> "0..1" ChemicalEntity : exposure_substance click ChemicalEntity href "../ChemicalEntity" ExposureEvent : exposure_type ExposureEvent --> "0..1" ExposureTypeEnum : exposure_type click ExposureTypeEnum href "../ExposureTypeEnum" ExposureEvent : frequency ExposureEvent --> "0..1" QuantityValue : frequency click QuantityValue href "../QuantityValue" ExposureEvent : id ExposureEvent : name ExposureEvent : start_stage ExposureEvent --> "0..1" DevelopmentalStage : start_stage click DevelopmentalStage href "../DevelopmentalStage"

Inheritance

Slots

Name Cardinality and Range Description Inheritance
exposure_substance 0..1
ChemicalEntity		 The chemical substance used in the exposure direct
exposure_type 0..1
ExposureTypeEnum		 The exposure type direct
concentration 0..1
Concentration		 The concentration of the chemical used direct
start_stage 0..1
DevelopmentalStage		 The stage at which exposure starts direct
end_stage 0..1
DevelopmentalStage		 The stage at which exposure ends direct
duration 0..1
QuantityValue		 The duration of the exposure direct
frequency 0..1
QuantityValue		 The frequency of the exposure direct
id 1
String		 Unique identifier for the entity NamedThing
name 0..1
String		 Name or label of the entity NamedThing

Usages

used by used in type used
FishExposureOutcome exposure_event range ExposureEvent

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema

Mappings

Mapping Type Mapped Value
self zebrafish_toxicology_atlas_schema:ExposureEvent
native zebrafish_toxicology_atlas_schema:ExposureEvent
exact biolink:ExposureEvent

LinkML Source

Direct

name: ExposureEvent
description: An instance of a toxicological exposure event in the study.  According
  to ECTO,  an exposure
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
exact_mappings:
- biolink:ExposureEvent
is_a: NamedThing
slots:
- exposure_substance
- exposure_type
- concentration
- start_stage
- end_stage
- duration
- frequency
slot_usage:
  exposure_substance:
    name: exposure_substance
    description: The chemical substance used in the exposure.
    comments:
    - '# TODO: as Sabrina these questions: Will all exposures be chemicals represented
      by ChEBI (e.g., what about complex mixtures/drugs)? Will all exposures be toxic?'
    range: ChemicalEntity
  concentration:
    name: concentration
    description: The concentration of the chemical used.
    range: Concentration
  start_stage:
    name: start_stage
    description: The stage at which exposure starts.
    range: DevelopmentalStage
  end_stage:
    name: end_stage
    description: The stage at which exposure ends.
    range: DevelopmentalStage

Induced

name: ExposureEvent
description: An instance of a toxicological exposure event in the study.  According
  to ECTO,  an exposure
from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
exact_mappings:
- biolink:ExposureEvent
is_a: NamedThing
slot_usage:
  exposure_substance:
    name: exposure_substance
    description: The chemical substance used in the exposure.
    comments:
    - '# TODO: as Sabrina these questions: Will all exposures be chemicals represented
      by ChEBI (e.g., what about complex mixtures/drugs)? Will all exposures be toxic?'
    range: ChemicalEntity
  concentration:
    name: concentration
    description: The concentration of the chemical used.
    range: Concentration
  start_stage:
    name: start_stage
    description: The stage at which exposure starts.
    range: DevelopmentalStage
  end_stage:
    name: end_stage
    description: The stage at which exposure ends.
    range: DevelopmentalStage
attributes:
  exposure_substance:
    name: exposure_substance
    description: The chemical substance used in the exposure.
    comments:
    - '# TODO: as Sabrina these questions: Will all exposures be chemicals represented
      by ChEBI (e.g., what about complex mixtures/drugs)? Will all exposures be toxic?'
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: exposure_substance
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: ChemicalEntity
  exposure_type:
    name: exposure_type
    description: The exposure type.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: exposure_type
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: ExposureTypeEnum
  concentration:
    name: concentration
    description: The concentration of the chemical used.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: concentration
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: Concentration
  start_stage:
    name: start_stage
    description: The stage at which exposure starts.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: start_stage
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: DevelopmentalStage
  end_stage:
    name: end_stage
    description: The stage at which exposure ends.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: end_stage
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: DevelopmentalStage
  duration:
    name: duration
    description: The duration of the exposure.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: duration
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: QuantityValue
  frequency:
    name: frequency
    description: The frequency of the exposure.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: frequency
    owner: ExposureEvent
    domain_of:
    - ExposureEvent
    range: QuantityValue
  id:
    name: id
    description: Unique identifier for the entity.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    identifier: true
    alias: id
    owner: ExposureEvent
    domain_of:
    - NamedThing
    range: string
    required: true
  name:
    name: name
    description: Name or label of the entity.
    from_schema: https://w3id.org/sierra-moxon/zebrafish-toxicology-atlas-schema
    rank: 1000
    alias: name
    owner: ExposureEvent
    domain_of:
    - NamedThing
    - Allele
    - Gene
    - ChemicalEntity
    - DevelopmentalStage
    range: string