Class: HarmonizedEvent

A record that tracks the provenance of a harmonized Key Event back to the Key Event held in the AOP-Wiki that it was derived from. Each record pairs one source Event (source_event_id, with its label and identifier as found in the source) with the harmonized Event it maps to (harmonized_event_id), and carries the mapping status and the raw mapping value from the harmonization process. A harmonized Key Event is a consolidation of one or more conceptually similar or redundant AOP-Wiki Key Events; these records are what make that consolidation auditable.

URI: http://example.org/aopwiki-emod/HarmonizedEvent

classDiagram class HarmonizedEvent click HarmonizedEvent href "../HarmonizedEvent/" HarmonizedEvent : created_at HarmonizedEvent : harmonized_event_id HarmonizedEvent --> "0..1" Event : harmonized_event_id click Event href "../Event/" HarmonizedEvent : harmonized_label HarmonizedEvent : harmonized_label_key HarmonizedEvent : id HarmonizedEvent : mapping_status HarmonizedEvent : raw_mapping_value HarmonizedEvent : source_event_id HarmonizedEvent --> "0..1" Event : source_event_id click Event href "../Event/" HarmonizedEvent : source_event_id_text HarmonizedEvent : source_event_label HarmonizedEvent : updated_at

Slots

Name	Cardinality and Range	Description	Inheritance
created_at	0..1 Datetime	Timestamp of when the record was created	direct
updated_at	0..1 Datetime	Timestamp of when the record was last updated	direct
id	1 Integer		direct
source_event_id	0..1 Event		direct
source_event_id_text	0..1 String		direct
source_event_label	0..1 String		direct
harmonized_label	0..1 String		direct
harmonized_label_key	0..1 String		direct
harmonized_event_id	0..1 Event		direct
raw_mapping_value	0..1 String		direct
mapping_status	0..1 String		direct

Identifier and Mapping Information

Schema Source

from schema: http://example.org/aopwiki-emod

Mappings

Mapping Type	Mapped Value
self	http://example.org/aopwiki-emod/HarmonizedEvent
native	http://example.org/aopwiki-emod/HarmonizedEvent

LinkML Source

Direct

name: HarmonizedEvent
description: A record that tracks the provenance of a harmonized Key Event back to
  the Key Event held in the AOP-Wiki that it was derived from. Each record pairs one
  source Event (source_event_id, with its label and identifier as found in the source)
  with the harmonized Event it maps to (harmonized_event_id), and carries the mapping
  status and the raw mapping value from the harmonization process. A harmonized Key
  Event is a consolidation of one or more conceptually similar or redundant AOP-Wiki
  Key Events; these records are what make that consolidation auditable.
from_schema: http://example.org/aopwiki-emod
slots:
- created_at
- updated_at
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    identifier: true
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    - User
    range: integer
    required: true
  source_event_id:
    name: source_event_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - HarmonizedEvent
    range: Event
    inlined: true
  source_event_id_text:
    name: source_event_id_text
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - HarmonizedEvent
  source_event_label:
    name: source_event_label
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - HarmonizedEvent
  harmonized_label:
    name: harmonized_label
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - HarmonizedEvent
  harmonized_label_key:
    name: harmonized_label_key
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - HarmonizedEvent
  harmonized_event_id:
    name: harmonized_event_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - HarmonizedEvent
    range: Event
    inlined: true
  raw_mapping_value:
    name: raw_mapping_value
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - HarmonizedEvent
  mapping_status:
    name: mapping_status
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - HarmonizedEvent

Induced

name: HarmonizedEvent
description: A record that tracks the provenance of a harmonized Key Event back to
  the Key Event held in the AOP-Wiki that it was derived from. Each record pairs one
  source Event (source_event_id, with its label and identifier as found in the source)
  with the harmonized Event it maps to (harmonized_event_id), and carries the mapping
  status and the raw mapping value from the harmonization process. A harmonized Key
  Event is a consolidation of one or more conceptually similar or redundant AOP-Wiki
  Key Events; these records are what make that consolidation auditable.
from_schema: http://example.org/aopwiki-emod
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    identifier: true
    alias: id
    owner: HarmonizedEvent
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    - User
    range: integer
    required: true
  source_event_id:
    name: source_event_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: source_event_id
    owner: HarmonizedEvent
    domain_of:
    - HarmonizedEvent
    range: Event
    inlined: true
  source_event_id_text:
    name: source_event_id_text
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: source_event_id_text
    owner: HarmonizedEvent
    domain_of:
    - HarmonizedEvent
    range: string
  source_event_label:
    name: source_event_label
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: source_event_label
    owner: HarmonizedEvent
    domain_of:
    - HarmonizedEvent
    range: string
  harmonized_label:
    name: harmonized_label
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: harmonized_label
    owner: HarmonizedEvent
    domain_of:
    - HarmonizedEvent
    range: string
  harmonized_label_key:
    name: harmonized_label_key
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: harmonized_label_key
    owner: HarmonizedEvent
    domain_of:
    - HarmonizedEvent
    range: string
  harmonized_event_id:
    name: harmonized_event_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: harmonized_event_id
    owner: HarmonizedEvent
    domain_of:
    - HarmonizedEvent
    range: Event
    inlined: true
  raw_mapping_value:
    name: raw_mapping_value
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: raw_mapping_value
    owner: HarmonizedEvent
    domain_of:
    - HarmonizedEvent
    range: string
  mapping_status:
    name: mapping_status
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: mapping_status
    owner: HarmonizedEvent
    domain_of:
    - HarmonizedEvent
    range: string
  created_at:
    name: created_at
    description: Timestamp of when the record was created
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: created_at
    owner: HarmonizedEvent
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    range: datetime
  updated_at:
    name: updated_at
    description: Timestamp of when the record was last updated
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: updated_at
    owner: HarmonizedEvent
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    range: datetime