Class: LifeStageTerm

A term stating the life stage of the organisms to which a biological observation or claim applies, such as an embryonic, larval, juvenile, adult, or age-defined stage, drawn from the AOP-Wiki's list of life-stage terms. In EMOD a life-stage term can be attached to a line of evidence or to an applicability statement on an AOP, Key Event, or Key Event Relationship. An applicability statement may be asserted during AOP development, or derived from the life stages recorded on cited evidence; where evidence is cited, the life stage claimed can be traced to an Observation.

URI: http://example.org/aopwiki-emod/LifeStageTerm

classDiagram class LifeStageTerm click LifeStageTerm href "../LifeStageTerm/" LifeStageTerm : created_at LifeStageTerm : id LifeStageTerm : term LifeStageTerm --> "0..1" LifeStageTermEnum : term click LifeStageTermEnum href "../LifeStageTermEnum/" LifeStageTerm : updated_at

Slots

Name	Cardinality and Range	Description	Inheritance
created_at	0..1 Datetime	Timestamp of when the record was created	direct
updated_at	0..1 Datetime	Timestamp of when the record was last updated	direct
id	0..1 Integer		direct
term	0..1 LifeStageTermEnum		direct

Usages

used by	used in	type	used
Evidence	life_stage_term_id	range	LifeStageTerm
AopToLifeStage	life_stage_term_id	range	LifeStageTerm
EventToLifeStage	life_stage_term_id	range	LifeStageTerm
KeRelationshipToLifeStage	life_stage_term_id	range	LifeStageTerm

Identifier and Mapping Information

Schema Source

from schema: http://example.org/aopwiki-emod

Mappings

Mapping Type	Mapped Value
self	http://example.org/aopwiki-emod/LifeStageTerm
native	http://example.org/aopwiki-emod/LifeStageTerm

LinkML Source

Direct

name: LifeStageTerm
description: A term stating the life stage of the organisms to which a biological
  observation or claim applies, such as an embryonic, larval, juvenile, adult, or
  age-defined stage, drawn from the AOP-Wiki's list of life-stage terms. In EMOD a
  life-stage term can be attached to a line of evidence or to an applicability statement
  on an AOP, Key Event, or Key Event Relationship. An applicability statement may
  be asserted during AOP development, or derived from the life stages recorded on
  cited evidence; where evidence is cited, the life stage claimed can be traced to
  an Observation.
from_schema: http://example.org/aopwiki-emod
slots:
- created_at
- updated_at
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    - User
    range: integer
  term:
    name: term
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - CellTerm
    - ConfidenceLevel
    - Directness
    - LifeStageTerm
    - OrganTerm
    - SexTerm
    - TaxonTerm
    range: LifeStageTermEnum

Induced

name: LifeStageTerm
description: A term stating the life stage of the organisms to which a biological
  observation or claim applies, such as an embryonic, larval, juvenile, adult, or
  age-defined stage, drawn from the AOP-Wiki's list of life-stage terms. In EMOD a
  life-stage term can be attached to a line of evidence or to an applicability statement
  on an AOP, Key Event, or Key Event Relationship. An applicability statement may
  be asserted during AOP development, or derived from the life stages recorded on
  cited evidence; where evidence is cited, the life stage claimed can be traced to
  an Observation.
from_schema: http://example.org/aopwiki-emod
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    alias: id
    owner: LifeStageTerm
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    - User
    range: integer
  term:
    name: term
    from_schema: http://example.org/aopwiki-emod
    alias: term
    owner: LifeStageTerm
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - CellTerm
    - ConfidenceLevel
    - Directness
    - LifeStageTerm
    - OrganTerm
    - SexTerm
    - TaxonTerm
    range: LifeStageTermEnum
  created_at:
    name: created_at
    description: Timestamp of when the record was created
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: created_at
    owner: LifeStageTerm
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    range: datetime
  updated_at:
    name: updated_at
    description: Timestamp of when the record was last updated
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: updated_at
    owner: LifeStageTerm
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    range: datetime