Class: EvidenceItem

One piece of evidence for a claim: which publication it comes from, an exact quote from that publication, whether the quote supports or refutes the claim, and what kind of study produced it.

URI: soma:EvidenceItem

 classDiagram
    class EvidenceItem
    click EvidenceItem href "../EvidenceItem/"
      EvidenceItem : evidence_source





        EvidenceItem --> "0..1" EvidenceSourceEnum : evidence_source
        click EvidenceSourceEnum href "../EvidenceSourceEnum/"



      EvidenceItem : explanation

      EvidenceItem : reference

      EvidenceItem : reference_title

      EvidenceItem : snippet

      EvidenceItem : supports





        EvidenceItem --> "0..1" EvidenceItemSupportEnum : supports
        click EvidenceItemSupportEnum href "../EvidenceItemSupportEnum/"

Slots

Name	Cardinality and Range	Description	Inheritance
reference	0..1 PMID	The cited publication's PubMed ID, e	direct
reference_title	0..1 recommended String	The title of the cited publication, copied from the cached reference record (...	direct
supports	0..1 EvidenceItemSupportEnum	Which way the quoted evidence points: does it support the claim, contradict i...	direct
evidence_source	0..1 EvidenceSourceEnum	What kind of study the cited publication reports — classify the paper, not th...	direct
snippet	0..1 String	An exact quote from the cited publication that supports or refutes the claim	direct
explanation	0..1 String	One or two sentences on how the quoted passage supports the specific claim it...	direct

Usages

used by	used in	type	used
KeyEvent	evidence	range	EvidenceItem
KeyEventRelationship	evidence	range	EvidenceItem
MolecularInitiatingEvent	evidence	range	EvidenceItem
Assay	evidence	range	EvidenceItem
AssayOutputMeasurement	evidence	range	EvidenceItem
CiliaryFunctionAssay	evidence	range	EvidenceItem
CiliaryFunctionOutput	evidence	range	EvidenceItem
ASLAssay	evidence	range	EvidenceItem
ASLOutput	evidence	range	EvidenceItem
MucociliaryClearanceAssay	evidence	range	EvidenceItem
MucociliaryClearanceOutput	evidence	range	EvidenceItem
OxidativeStressAssay	evidence	range	EvidenceItem
OxidativeStressOutput	evidence	range	EvidenceItem
CFTRFunctionAssay	evidence	range	EvidenceItem
CFTRFunctionOutput	evidence	range	EvidenceItem
EGFRSignalingAssay	evidence	range	EvidenceItem
EGFRSignalingOutput	evidence	range	EvidenceItem
GobletCellAssay	evidence	range	EvidenceItem
GobletCellOutput	evidence	range	EvidenceItem
BALFSputumAssay	evidence	range	EvidenceItem
BALFSputumOutput	evidence	range	EvidenceItem
LungFunctionAssay	evidence	range	EvidenceItem
LungFunctionOutput	evidence	range	EvidenceItem
FoxJExpressionAssay	evidence	range	EvidenceItem
FoxJExpressionOutput	evidence	range	EvidenceItem
GeneExpressionAssay	evidence	range	EvidenceItem
GeneExpressionOutput	evidence	range	EvidenceItem

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/EHS-Data-Standards/soma

Mappings

Mapping Type	Mapped Value
self	soma:EvidenceItem
native	soma:EvidenceItem

LinkML Source

Direct

name: EvidenceItem
description: 'One piece of evidence for a claim: which publication it comes from,
  an exact quote from that publication, whether the quote supports or refutes the
  claim, and what kind of study produced it.'
from_schema: https://w3id.org/EHS-Data-Standards/soma
slots:
- reference
- reference_title
- supports
- evidence_source
- snippet
- explanation

Induced

name: EvidenceItem
description: 'One piece of evidence for a claim: which publication it comes from,
  an exact quote from that publication, whether the quote supports or refutes the
  claim, and what kind of study produced it.'
from_schema: https://w3id.org/EHS-Data-Standards/soma
attributes:
  reference:
    name: reference
    implements:
    - linkml:authoritative_reference
    description: The cited publication's PubMed ID, e.g. "PMID:12345678".
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: reference
    owner: EvidenceItem
    domain_of:
    - EvidenceItem
    - PublicationReference
    range: PMID
    pattern: ^PMID:\d+$
  reference_title:
    name: reference_title
    implements:
    - dcterms:title
    description: The title of the cited publication, copied from the cached reference
      record (references_cache/), never typed from memory.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: reference_title
    owner: EvidenceItem
    domain_of:
    - EvidenceItem
    - PublicationReference
    range: string
    recommended: true
  supports:
    name: supports
    description: 'Which way the quoted evidence points: does it support the claim,
      contradict it, or turn out not to bear on it at all.'
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: supports
    owner: EvidenceItem
    domain_of:
    - EvidenceItem
    range: EvidenceItemSupportEnum
  evidence_source:
    name: evidence_source
    description: What kind of study the cited publication reports — classify the paper,
      not the person doing the extraction.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: evidence_source
    owner: EvidenceItem
    domain_of:
    - EvidenceItem
    range: EvidenceSourceEnum
  snippet:
    name: snippet
    implements:
    - linkml:excerpt
    description: 'An exact quote from the cited publication that supports or refutes
      the claim. Checked automatically: the text must appear word-for-word in the
      cached copy of the publication.'
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: snippet
    owner: EvidenceItem
    domain_of:
    - EvidenceItem
    range: string
  explanation:
    name: explanation
    description: One or two sentences on how the quoted passage supports the specific
      claim it is attached to.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: explanation
    owner: EvidenceItem
    domain_of:
    - EvidenceItem
    range: string