Class: Aop
An AOP describes a sequence of events commencing with initial interaction(s) of a stressor with a biomolecule within an organism that causes a perturbation in its biology (i.e., molecular initiating event, MIE), which can progress through a dependent series of intermediate key events (KEs) and culminate in an adverse outcome (AO) considered relevant to risk assessment or regulatory decision-making. AOPs are composed of a causal sequence of upstream to downstream KEs, representing a cascading series of measurable biological changes that can be expected to occur if the perturbation is sufficiently severe (i.e., in terms of potency, duration, frequency) to drive the pathway all the way to the AO. Importantly, AOPs do not describe every detail of the biology but instead focus on describing critical steps or check-points along the path to adversity, which are both measurable and have potential predictive value for regulatory application.
URI: http://example.org/aopwiki-emod/Aop
Slots
Usages
| used by | used in | type | used |
|---|---|---|---|
| Assay | aops | range | Aop |
| AopToEvent | aop_id | range | Aop |
| AopToLifeStage | aop_id | range | Aop |
| AopToKeRelationship | aop_id | range | Aop |
| AopToSex | aop_id | range | Aop |
| AopToPrototypicalStressor | aop_id | range | Aop |
| AopToTaxon | aop_id | range | Aop |
| HarmonizedAop | new_aop_id | range | Aop |
| HarmonizedAop | source_aop_id | range | Aop |
Identifier and Mapping Information
Schema Source
- from schema: http://example.org/aopwiki-emod
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | http://example.org/aopwiki-emod/Aop |
| native | http://example.org/aopwiki-emod/Aop |
LinkML Source
Direct
name: Aop
description: An AOP describes a sequence of events commencing with initial interaction(s)
of a stressor with a biomolecule within an organism that causes a perturbation in
its biology (i.e., molecular initiating event, MIE), which can progress through
a dependent series of intermediate key events (KEs) and culminate in an adverse
outcome (AO) considered relevant to risk assessment or regulatory decision-making.
AOPs are composed of a causal sequence of upstream to downstream KEs, representing
a cascading series of measurable biological changes that can be expected to occur
if the perturbation is sufficiently severe (i.e., in terms of potency, duration,
frequency) to drive the pathway all the way to the AO. Importantly, AOPs do not
describe every detail of the biology but instead focus on describing critical steps
or check-points along the path to adversity, which are both measurable and have
potential predictive value for regulatory application.
from_schema: http://example.org/aopwiki-emod
slots:
- created_at
- updated_at
attributes:
id:
name: id
from_schema: http://example.org/aopwiki-emod
rank: 1000
identifier: true
domain_of:
- Aop
- Event
- KeRelationship
- Assay
- Observation
- Evidence
- Stressor
- Citation
- BiologicalAction
- BiologicalObject
- BiologicalProcess
- LevelOfBiologicalOrganization
- AopToEvent
- AopToLifeStage
- AopToKeRelationship
- AopToSex
- AopToPrototypicalStressor
- AopToTaxon
- AssignedLicense
- BioTargetFamily
- CellTerm
- ConfidenceLevel
- Directness
- EventToLifeStage
- EventToSex
- EventToTaxon
- ExperimentSetup
- ExperimentType
- Handbook
- HarmonizedAop
- HarmonizedEvent
- License
- LifeStageTerm
- OecdStatus
- OrganTerm
- KeRelationshipToLifeStage
- KeRelationshipToSex
- KeRelationshipToTaxon
- SexTerm
- EventComponent
- TaxonTerm
- TestGuideline
- User
range: integer
required: true
title:
name: title
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
- Event
- Assay
- Citation
short_name:
name: short_name
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
- Event
corresponding_author_id:
name: corresponding_author_id
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
range: User
inlined: true
abstract:
name: abstract
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
authors:
name: authors
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
- Citation
applicability_of_the_aop:
name: applicability_of_the_aop
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
key_event_essentiality:
name: key_event_essentiality
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
weight_of_evidence_summary:
name: weight_of_evidence_summary
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
quantitative_considerations:
name: quantitative_considerations
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
optional_considerations:
name: optional_considerations
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
overall_assessment:
name: overall_assessment
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
background:
name: background
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
oecd_project:
name: oecd_project
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
oecd_status_id:
name: oecd_status_id
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
range: OecdStatus
inlined: true
graphical_representation_image_uid:
name: graphical_representation_image_uid
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
legacy:
name: legacy
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
range: boolean
overall_assessment_file_uid:
name: overall_assessment_file_uid
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
changed_at:
name: changed_at
from_schema: http://example.org/aopwiki-emod
domain_of:
- Aop
development_strategy:
name: development_strategy
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
known_modulating_factors:
name: known_modulating_factors
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
assigned_license_id:
name: assigned_license_id
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
range: AssignedLicense
inlined: true
handbook_id:
name: handbook_id
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
range: Handbook
inlined: true
completion_score:
name: completion_score
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
- Event
- KeRelationship
range: float
mean_ker_score:
name: mean_ker_score
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
range: float
mean_event_score:
name: mean_event_score
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
range: float
has_references:
name: has_references
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
range: boolean
project_129:
name: project_129
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
range: boolean
has_structured_methods:
name: has_structured_methods
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
range: boolean
assays:
name: assays
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
- Event
- KeRelationship
- Citation
- BioTargetFamily
- TestGuideline
range: Assay
multivalued: true
prototypical_stressors:
name: prototypical_stressors
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
range: AopToPrototypicalStressor
multivalued: true
inlined: true
inlined_as_list: true
events:
name: events
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
- Assay
- Observation
- BioTargetFamily
- TestGuideline
range: AopToEvent
multivalued: true
inlined: true
inlined_as_list: true
ke_relationships:
name: ke_relationships
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
- Assay
range: AopToKeRelationship
multivalued: true
inlined: true
inlined_as_list: true
life_stages:
name: life_stages
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
- Event
- KeRelationship
range: AopToLifeStage
multivalued: true
inlined: true
inlined_as_list: true
sexes:
name: sexes
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
- Event
- KeRelationship
range: AopToSex
multivalued: true
inlined: true
inlined_as_list: true
taxons:
name: taxons
from_schema: http://example.org/aopwiki-emod
rank: 1000
domain_of:
- Aop
- Event
- KeRelationship
range: AopToTaxon
multivalued: true
inlined: true
inlined_as_list: true
Induced
name: Aop
description: An AOP describes a sequence of events commencing with initial interaction(s)
of a stressor with a biomolecule within an organism that causes a perturbation in
its biology (i.e., molecular initiating event, MIE), which can progress through
a dependent series of intermediate key events (KEs) and culminate in an adverse
outcome (AO) considered relevant to risk assessment or regulatory decision-making.
AOPs are composed of a causal sequence of upstream to downstream KEs, representing
a cascading series of measurable biological changes that can be expected to occur
if the perturbation is sufficiently severe (i.e., in terms of potency, duration,
frequency) to drive the pathway all the way to the AO. Importantly, AOPs do not
describe every detail of the biology but instead focus on describing critical steps
or check-points along the path to adversity, which are both measurable and have
potential predictive value for regulatory application.
from_schema: http://example.org/aopwiki-emod
attributes:
id:
name: id
from_schema: http://example.org/aopwiki-emod
rank: 1000
identifier: true
alias: id
owner: Aop
domain_of:
- Aop
- Event
- KeRelationship
- Assay
- Observation
- Evidence
- Stressor
- Citation
- BiologicalAction
- BiologicalObject
- BiologicalProcess
- LevelOfBiologicalOrganization
- AopToEvent
- AopToLifeStage
- AopToKeRelationship
- AopToSex
- AopToPrototypicalStressor
- AopToTaxon
- AssignedLicense
- BioTargetFamily
- CellTerm
- ConfidenceLevel
- Directness
- EventToLifeStage
- EventToSex
- EventToTaxon
- ExperimentSetup
- ExperimentType
- Handbook
- HarmonizedAop
- HarmonizedEvent
- License
- LifeStageTerm
- OecdStatus
- OrganTerm
- KeRelationshipToLifeStage
- KeRelationshipToSex
- KeRelationshipToTaxon
- SexTerm
- EventComponent
- TaxonTerm
- TestGuideline
- User
range: integer
title:
name: title
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: title
owner: Aop
domain_of:
- Aop
- Event
- Assay
- Citation
range: string
short_name:
name: short_name
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: short_name
owner: Aop
domain_of:
- Aop
- Event
range: string
corresponding_author_id:
name: corresponding_author_id
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: corresponding_author_id
owner: Aop
domain_of:
- Aop
range: User
inlined: true
abstract:
name: abstract
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: abstract
owner: Aop
domain_of:
- Aop
range: string
authors:
name: authors
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: authors
owner: Aop
domain_of:
- Aop
- Citation
range: string
applicability_of_the_aop:
name: applicability_of_the_aop
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: applicability_of_the_aop
owner: Aop
domain_of:
- Aop
range: string
key_event_essentiality:
name: key_event_essentiality
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: key_event_essentiality
owner: Aop
domain_of:
- Aop
range: string
weight_of_evidence_summary:
name: weight_of_evidence_summary
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: weight_of_evidence_summary
owner: Aop
domain_of:
- Aop
range: string
quantitative_considerations:
name: quantitative_considerations
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: quantitative_considerations
owner: Aop
domain_of:
- Aop
range: string
optional_considerations:
name: optional_considerations
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: optional_considerations
owner: Aop
domain_of:
- Aop
range: string
overall_assessment:
name: overall_assessment
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: overall_assessment
owner: Aop
domain_of:
- Aop
range: string
background:
name: background
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: background
owner: Aop
domain_of:
- Aop
range: string
oecd_project:
name: oecd_project
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: oecd_project
owner: Aop
domain_of:
- Aop
range: string
oecd_status_id:
name: oecd_status_id
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: oecd_status_id
owner: Aop
domain_of:
- Aop
range: OecdStatus
inlined: true
graphical_representation_image_uid:
name: graphical_representation_image_uid
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: graphical_representation_image_uid
owner: Aop
domain_of:
- Aop
range: string
legacy:
name: legacy
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: legacy
owner: Aop
domain_of:
- Aop
range: boolean
overall_assessment_file_uid:
name: overall_assessment_file_uid
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: overall_assessment_file_uid
owner: Aop
domain_of:
- Aop
range: string
changed_at:
name: changed_at
from_schema: http://example.org/aopwiki-emod
alias: changed_at
owner: Aop
domain_of:
- Aop
range: string
development_strategy:
name: development_strategy
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: development_strategy
owner: Aop
domain_of:
- Aop
range: string
known_modulating_factors:
name: known_modulating_factors
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: known_modulating_factors
owner: Aop
domain_of:
- Aop
range: string
assigned_license_id:
name: assigned_license_id
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: assigned_license_id
owner: Aop
domain_of:
- Aop
range: AssignedLicense
inlined: true
handbook_id:
name: handbook_id
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: handbook_id
owner: Aop
domain_of:
- Aop
range: Handbook
inlined: true
completion_score:
name: completion_score
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: completion_score
owner: Aop
domain_of:
- Aop
- Event
- KeRelationship
range: float
mean_ker_score:
name: mean_ker_score
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: mean_ker_score
owner: Aop
domain_of:
- Aop
range: float
mean_event_score:
name: mean_event_score
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: mean_event_score
owner: Aop
domain_of:
- Aop
range: float
has_references:
name: has_references
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: has_references
owner: Aop
domain_of:
- Aop
range: boolean
project_129:
name: project_129
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: project_129
owner: Aop
domain_of:
- Aop
range: boolean
has_structured_methods:
name: has_structured_methods
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: has_structured_methods
owner: Aop
domain_of:
- Aop
range: boolean
assays:
name: assays
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: assays
owner: Aop
domain_of:
- Aop
- Event
- KeRelationship
- Citation
- BioTargetFamily
- TestGuideline
range: Assay
multivalued: true
prototypical_stressors:
name: prototypical_stressors
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: prototypical_stressors
owner: Aop
domain_of:
- Aop
range: AopToPrototypicalStressor
multivalued: true
inlined: true
inlined_as_list: true
events:
name: events
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: events
owner: Aop
domain_of:
- Aop
- Assay
- Observation
- BioTargetFamily
- TestGuideline
range: AopToEvent
multivalued: true
inlined: true
inlined_as_list: true
ke_relationships:
name: ke_relationships
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: ke_relationships
owner: Aop
domain_of:
- Aop
- Assay
range: AopToKeRelationship
multivalued: true
inlined: true
inlined_as_list: true
life_stages:
name: life_stages
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: life_stages
owner: Aop
domain_of:
- Aop
- Event
- KeRelationship
range: AopToLifeStage
multivalued: true
inlined: true
inlined_as_list: true
sexes:
name: sexes
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: sexes
owner: Aop
domain_of:
- Aop
- Event
- KeRelationship
range: AopToSex
multivalued: true
inlined: true
inlined_as_list: true
taxons:
name: taxons
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: taxons
owner: Aop
domain_of:
- Aop
- Event
- KeRelationship
range: AopToTaxon
multivalued: true
inlined: true
inlined_as_list: true
created_at:
name: created_at
description: Timestamp of when the record was created
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: created_at
owner: Aop
domain_of:
- Aop
- Event
- KeRelationship
- Assay
- Observation
- Evidence
- Stressor
- Citation
- BiologicalAction
- BiologicalObject
- BiologicalProcess
- LevelOfBiologicalOrganization
- AopToEvent
- AopToLifeStage
- AopToKeRelationship
- AopToSex
- AopToPrototypicalStressor
- AopToTaxon
- AssignedLicense
- BioTargetFamily
- CellTerm
- ConfidenceLevel
- Directness
- EventToLifeStage
- EventToSex
- EventToTaxon
- ExperimentSetup
- ExperimentType
- Handbook
- HarmonizedAop
- HarmonizedEvent
- License
- LifeStageTerm
- OecdStatus
- OrganTerm
- KeRelationshipToLifeStage
- KeRelationshipToSex
- KeRelationshipToTaxon
- SexTerm
- EventComponent
- TaxonTerm
- TestGuideline
range: datetime
updated_at:
name: updated_at
description: Timestamp of when the record was last updated
from_schema: http://example.org/aopwiki-emod
rank: 1000
alias: updated_at
owner: Aop
domain_of:
- Aop
- Event
- KeRelationship
- Assay
- Observation
- Evidence
- Stressor
- Citation
- BiologicalAction
- BiologicalObject
- BiologicalProcess
- LevelOfBiologicalOrganization
- AopToEvent
- AopToLifeStage
- AopToKeRelationship
- AopToSex
- AopToPrototypicalStressor
- AopToTaxon
- AssignedLicense
- BioTargetFamily
- CellTerm
- ConfidenceLevel
- Directness
- EventToLifeStage
- EventToSex
- EventToTaxon
- ExperimentSetup
- ExperimentType
- Handbook
- HarmonizedAop
- HarmonizedEvent
- License
- LifeStageTerm
- OecdStatus
- OrganTerm
- KeRelationshipToLifeStage
- KeRelationshipToSex
- KeRelationshipToTaxon
- SexTerm
- EventComponent
- TaxonTerm
- TestGuideline
range: datetime