Class: TaxonTerm

URI: http://example.org/aopwiki-emod/TaxonTerm

classDiagram class TaxonTerm click TaxonTerm href "../TaxonTerm/" TaxonTerm : aops TaxonTerm --> "*" AopTaxon : aops click AopTaxon href "../AopTaxon/" TaxonTerm : created_at TaxonTerm : events TaxonTerm --> "*" EventTaxon : events click EventTaxon href "../EventTaxon/" TaxonTerm : id TaxonTerm : ncbi_id TaxonTerm : relationships TaxonTerm --> "*" RelationshipTaxon : relationships click RelationshipTaxon href "../RelationshipTaxon/" TaxonTerm : scientific_term TaxonTerm : source TaxonTerm : source_id TaxonTerm : term TaxonTerm : term_class TaxonTerm --> "0..1" TaxonTermClassEnum : term_class click TaxonTermClassEnum href "../TaxonTermClassEnum/" TaxonTerm : updated_at

Slots

Name	Cardinality and Range	Description	Inheritance
created_at	0..1 Datetime	Timestamp of when the record was created	direct
updated_at	0..1 Datetime	Timestamp of when the record was last updated	direct
id	1 Integer		direct
term_class	0..1 TaxonTermClassEnum		direct
term	0..1 String		direct
source	0..1 String		direct
ncbi_id	0..1 String		direct
scientific_term	0..1 String		direct
source_id	0..1 String		direct
aops	* AopTaxon		direct
events	* EventTaxon		direct
relationships	* RelationshipTaxon		direct

Usages

used by	used in	type	used
AopTaxon	taxon_term_id	range	TaxonTerm
Assay	taxon_terms	range	TaxonTerm
EventTaxon	taxon_term_id	range	TaxonTerm
Evidence	taxon_term_id	range	TaxonTerm
RelationshipTaxon	taxon_term_id	range	TaxonTerm

Identifier and Mapping Information

Schema Source

from schema: http://example.org/aopwiki-emod

Mappings

Mapping Type	Mapped Value
self	http://example.org/aopwiki-emod/TaxonTerm
native	http://example.org/aopwiki-emod/TaxonTerm

LinkML Source

Direct

name: TaxonTerm
from_schema: http://example.org/aopwiki-emod
slots:
- created_at
- updated_at
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    identifier: true
    domain_of:
    - Aop
    - Event
    - Relationship
    - Stressor
    - BioTargetFamily
    - Observation
    - Citation
    - AopEvent
    - AopLifeStage
    - AopLog
    - AopRelationship
    - AopSex
    - AopStressor
    - AopTaxon
    - AssayBioTargetFamily
    - Assay
    - AssignedLicense
    - BatchImport
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - Chemical
    - CitationBioTargetFamily
    - CitationRelationship
    - ConfidenceLevel
    - Directness
    - EventLifeStage
    - EventLog
    - EventSex
    - EventBioTargetFamily
    - EventTaxon
    - Evidence
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - ObservationCitation
    - OecdStatus
    - OrganTerm
    - Profile
    - RelationshipLifeStage
    - RelationshipLog
    - RelationshipSex
    - RelationshipTaxon
    - SexTerm
    - StressorChemical
    - StressorLog
    - EventComponent
    - TaxonTerm
    - UrlLink
    - User
    range: integer
    required: true
  term_class:
    name: term_class
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - TaxonTerm
    range: TaxonTermClassEnum
  term:
    name: term
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - ConfidenceLevel
    - Directness
    - LifeStageTerm
    - OrganTerm
    - SexTerm
    - TaxonTerm
  source:
    name: source
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - TaxonTerm
  ncbi_id:
    name: ncbi_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - TaxonTerm
  scientific_term:
    name: scientific_term
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - TaxonTerm
  source_id:
    name: source_id
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - TaxonTerm
  aops:
    name: aops
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Event
    - Relationship
    - Stressor
    - LifeStageTerm
    - SexTerm
    - TaxonTerm
    range: AopTaxon
    multivalued: true
  events:
    name: events
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Aop
    - BioTargetFamily
    - Observation
    - Assay
    - LifeStageTerm
    - SexTerm
    - TaxonTerm
    range: EventTaxon
    multivalued: true
  relationships:
    name: relationships
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Aop
    - LifeStageTerm
    - SexTerm
    - TaxonTerm
    range: RelationshipTaxon
    multivalued: true

Induced

name: TaxonTerm
from_schema: http://example.org/aopwiki-emod
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    identifier: true
    alias: id
    owner: TaxonTerm
    domain_of:
    - Aop
    - Event
    - Relationship
    - Stressor
    - BioTargetFamily
    - Observation
    - Citation
    - AopEvent
    - AopLifeStage
    - AopLog
    - AopRelationship
    - AopSex
    - AopStressor
    - AopTaxon
    - AssayBioTargetFamily
    - Assay
    - AssignedLicense
    - BatchImport
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - Chemical
    - CitationBioTargetFamily
    - CitationRelationship
    - ConfidenceLevel
    - Directness
    - EventLifeStage
    - EventLog
    - EventSex
    - EventBioTargetFamily
    - EventTaxon
    - Evidence
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - ObservationCitation
    - OecdStatus
    - OrganTerm
    - Profile
    - RelationshipLifeStage
    - RelationshipLog
    - RelationshipSex
    - RelationshipTaxon
    - SexTerm
    - StressorChemical
    - StressorLog
    - EventComponent
    - TaxonTerm
    - UrlLink
    - User
    range: integer
    required: true
  term_class:
    name: term_class
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: term_class
    owner: TaxonTerm
    domain_of:
    - TaxonTerm
    range: TaxonTermClassEnum
  term:
    name: term
    from_schema: http://example.org/aopwiki-emod
    alias: term
    owner: TaxonTerm
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - ConfidenceLevel
    - Directness
    - LifeStageTerm
    - OrganTerm
    - SexTerm
    - TaxonTerm
    range: string
  source:
    name: source
    from_schema: http://example.org/aopwiki-emod
    alias: source
    owner: TaxonTerm
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - TaxonTerm
    range: string
  ncbi_id:
    name: ncbi_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: ncbi_id
    owner: TaxonTerm
    domain_of:
    - TaxonTerm
    range: string
  scientific_term:
    name: scientific_term
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: scientific_term
    owner: TaxonTerm
    domain_of:
    - TaxonTerm
    range: string
  source_id:
    name: source_id
    from_schema: http://example.org/aopwiki-emod
    alias: source_id
    owner: TaxonTerm
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - TaxonTerm
    range: string
  aops:
    name: aops
    from_schema: http://example.org/aopwiki-emod
    alias: aops
    owner: TaxonTerm
    domain_of:
    - Event
    - Relationship
    - Stressor
    - LifeStageTerm
    - SexTerm
    - TaxonTerm
    range: AopTaxon
    multivalued: true
  events:
    name: events
    from_schema: http://example.org/aopwiki-emod
    alias: events
    owner: TaxonTerm
    domain_of:
    - Aop
    - BioTargetFamily
    - Observation
    - Assay
    - LifeStageTerm
    - SexTerm
    - TaxonTerm
    range: EventTaxon
    multivalued: true
  relationships:
    name: relationships
    from_schema: http://example.org/aopwiki-emod
    alias: relationships
    owner: TaxonTerm
    domain_of:
    - Aop
    - LifeStageTerm
    - SexTerm
    - TaxonTerm
    range: RelationshipTaxon
    multivalued: true
  created_at:
    name: created_at
    description: Timestamp of when the record was created
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: created_at
    owner: TaxonTerm
    domain_of:
    - Aop
    - Event
    - Relationship
    - Stressor
    - BioTargetFamily
    - Observation
    - Citation
    - AopEvent
    - AopLifeStage
    - AopLog
    - AopRelationship
    - AopSex
    - AopStressor
    - AopTaxon
    - AssayBioTargetFamily
    - Assay
    - AssignedLicense
    - BatchImport
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - Chemical
    - CitationBioTargetFamily
    - CitationRelationship
    - ConfidenceLevel
    - Directness
    - EventLifeStage
    - EventLog
    - EventSex
    - EventBioTargetFamily
    - EventTaxon
    - Evidence
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - ObservationCitation
    - OecdStatus
    - OrganTerm
    - Profile
    - RelationshipLifeStage
    - RelationshipLog
    - RelationshipSex
    - RelationshipTaxon
    - SexTerm
    - StressorChemical
    - StressorLog
    - EventComponent
    - TaxonTerm
    - UrlLink
    range: datetime
  updated_at:
    name: updated_at
    description: Timestamp of when the record was last updated
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: updated_at
    owner: TaxonTerm
    domain_of:
    - Aop
    - Event
    - Relationship
    - Stressor
    - BioTargetFamily
    - Observation
    - Citation
    - AopEvent
    - AopLifeStage
    - AopLog
    - AopRelationship
    - AopSex
    - AopStressor
    - AopTaxon
    - AssayBioTargetFamily
    - Assay
    - AssignedLicense
    - BatchImport
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - Chemical
    - CitationBioTargetFamily
    - CitationRelationship
    - ConfidenceLevel
    - Directness
    - EventLifeStage
    - EventLog
    - EventSex
    - EventBioTargetFamily
    - EventTaxon
    - Evidence
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - ObservationCitation
    - OecdStatus
    - OrganTerm
    - Profile
    - RelationshipLifeStage
    - RelationshipLog
    - RelationshipSex
    - RelationshipTaxon
    - SexTerm
    - StressorChemical
    - StressorLog
    - EventComponent
    - TaxonTerm
    - UrlLink
    range: datetime