Class: EventComponent

One component of an Event: a combination of a biological action with a biological object, a biological process, or both, describing the change the Event records. An Event may have several. The id is required, so that one combination can be shared by the Events that use it. The AOP-Wiki XML export does not carry the database's ids, so a record written outside the EMOD database has to assign its own. EnviroMech does this with one record per combination, under data/event_components/, and an id such as enviromech:ec-0001 whose number is the component's id: https://github.com/monarch-initiative/enviromech/tree/main/data/event_components

URI: http://example.org/aopwiki-emod/EventComponent

classDiagram class EventComponent click EventComponent href "../EventComponent/" EventComponent : biological_action_id EventComponent --> "0..1" BiologicalAction : biological_action_id click BiologicalAction href "../BiologicalAction/" EventComponent : biological_object_id EventComponent --> "0..1" BiologicalObject : biological_object_id click BiologicalObject href "../BiologicalObject/" EventComponent : biological_process_id EventComponent --> "0..1" BiologicalProcess : biological_process_id click BiologicalProcess href "../BiologicalProcess/" EventComponent : created_at EventComponent : id EventComponent : updated_at

Slots

Name	Cardinality and Range	Description	Inheritance
created_at	0..1 Datetime	Timestamp of when the record was created	direct
updated_at	0..1 Datetime	Timestamp of when the record was last updated	direct
id	1 Integer		direct
biological_action_id	0..1 BiologicalAction		direct
biological_object_id	0..1 BiologicalObject		direct
biological_process_id	0..1 BiologicalProcess		direct

Usages

used by	used in	type	used
Event	event_components	range	EventComponent

Identifier and Mapping Information

Schema Source

from schema: http://example.org/aopwiki-emod

Mappings

Mapping Type	Mapped Value
self	http://example.org/aopwiki-emod/EventComponent
native	http://example.org/aopwiki-emod/EventComponent

LinkML Source

Direct

name: EventComponent
description: 'One component of an Event: a combination of a biological action with
  a biological object, a biological process, or both, describing the change the Event
  records. An Event may have several. The id is required, so that one combination
  can be shared by the Events that use it. The AOP-Wiki XML export does not carry
  the database''s ids, so a record written outside the EMOD database has to assign
  its own. EnviroMech does this with one record per combination, under data/event_components/,
  and an id such as enviromech:ec-0001 whose number is the component''s id: https://github.com/monarch-initiative/enviromech/tree/main/data/event_components'
from_schema: http://example.org/aopwiki-emod
slots:
- created_at
- updated_at
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    identifier: true
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    - User
    range: integer
    required: true
  biological_action_id:
    name: biological_action_id
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Assay
    - Observation
    - EventComponent
    range: BiologicalAction
    inlined: true
  biological_object_id:
    name: biological_object_id
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Observation
    - EventComponent
    range: BiologicalObject
    inlined: true
  biological_process_id:
    name: biological_process_id
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Observation
    - EventComponent
    range: BiologicalProcess
    inlined: true

Induced

name: EventComponent
description: 'One component of an Event: a combination of a biological action with
  a biological object, a biological process, or both, describing the change the Event
  records. An Event may have several. The id is required, so that one combination
  can be shared by the Events that use it. The AOP-Wiki XML export does not carry
  the database''s ids, so a record written outside the EMOD database has to assign
  its own. EnviroMech does this with one record per combination, under data/event_components/,
  and an id such as enviromech:ec-0001 whose number is the component''s id: https://github.com/monarch-initiative/enviromech/tree/main/data/event_components'
from_schema: http://example.org/aopwiki-emod
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    identifier: true
    alias: id
    owner: EventComponent
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    - User
    range: integer
    required: true
  biological_action_id:
    name: biological_action_id
    from_schema: http://example.org/aopwiki-emod
    alias: biological_action_id
    owner: EventComponent
    domain_of:
    - Assay
    - Observation
    - EventComponent
    range: BiologicalAction
    inlined: true
  biological_object_id:
    name: biological_object_id
    from_schema: http://example.org/aopwiki-emod
    alias: biological_object_id
    owner: EventComponent
    domain_of:
    - Observation
    - EventComponent
    range: BiologicalObject
    inlined: true
  biological_process_id:
    name: biological_process_id
    from_schema: http://example.org/aopwiki-emod
    alias: biological_process_id
    owner: EventComponent
    domain_of:
    - Observation
    - EventComponent
    range: BiologicalProcess
    inlined: true
  created_at:
    name: created_at
    description: Timestamp of when the record was created
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: created_at
    owner: EventComponent
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    range: datetime
  updated_at:
    name: updated_at
    description: Timestamp of when the record was last updated
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: updated_at
    owner: EventComponent
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    range: datetime