Class: BiologicalObject

URI: http://example.org/aopwiki-emod/BiologicalObject

classDiagram class BiologicalObject click BiologicalObject href "../BiologicalObject/" BiologicalObject : created_at BiologicalObject : description BiologicalObject : id BiologicalObject : source BiologicalObject --> "0..1" BiologicalObjectSourceEnum : source click BiologicalObjectSourceEnum href "../BiologicalObjectSourceEnum/" BiologicalObject : source_id BiologicalObject : term BiologicalObject : updated_at BiologicalObject : url

Slots

Name	Cardinality and Range	Description	Inheritance
created_at	0..1 Datetime	Timestamp of when the record was created	direct
updated_at	0..1 Datetime	Timestamp of when the record was last updated	direct
id	1 Integer		direct
term	0..1 String		direct
source	0..1 BiologicalObjectSourceEnum		direct
source_id	0..1 String		direct
description	0..1 String		direct
url	0..1 String		direct

Usages

used by	used in	type	used
Observation	biological_object_id	range	BiologicalObject
Assay	objects	range	BiologicalObject
EventComponent	biological_object_id	range	BiologicalObject

Identifier and Mapping Information

Schema Source

from schema: http://example.org/aopwiki-emod

Mappings

Mapping Type	Mapped Value
self	http://example.org/aopwiki-emod/BiologicalObject
native	http://example.org/aopwiki-emod/BiologicalObject

LinkML Source

Direct

name: BiologicalObject
from_schema: http://example.org/aopwiki-emod
slots:
- created_at
- updated_at
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    identifier: true
    domain_of:
    - Aop
    - Event
    - Relationship
    - Stressor
    - BioTargetFamily
    - Observation
    - Citation
    - AopEvent
    - AopLifeStage
    - AopLog
    - AopRelationship
    - AopSex
    - AopStressor
    - AopTaxon
    - AssayBioTargetFamily
    - Assay
    - AssignedLicense
    - BatchImport
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - Chemical
    - CitationBioTargetFamily
    - CitationRelationship
    - ConfidenceLevel
    - Directness
    - EventLifeStage
    - EventLog
    - EventSex
    - EventBioTargetFamily
    - EventTaxon
    - Evidence
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - ObservationCitation
    - OecdStatus
    - OrganTerm
    - Profile
    - RelationshipLifeStage
    - RelationshipLog
    - RelationshipSex
    - RelationshipTaxon
    - SexTerm
    - StressorChemical
    - StressorLog
    - EventComponent
    - TaxonTerm
    - UrlLink
    - User
    range: integer
    required: true
  term:
    name: term
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - ConfidenceLevel
    - Directness
    - LifeStageTerm
    - OrganTerm
    - SexTerm
    - TaxonTerm
  source:
    name: source
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - TaxonTerm
    range: BiologicalObjectSourceEnum
  source_id:
    name: source_id
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - TaxonTerm
  description:
    name: description
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - AopLog
    - Assay
    - BatchImport
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - Directness
    - EventLog
    - License
    - OecdStatus
    - OrganTerm
    - RelationshipLog
    - StressorLog
  url:
    name: url
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - UrlLink

Induced

name: BiologicalObject
from_schema: http://example.org/aopwiki-emod
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    identifier: true
    alias: id
    owner: BiologicalObject
    domain_of:
    - Aop
    - Event
    - Relationship
    - Stressor
    - BioTargetFamily
    - Observation
    - Citation
    - AopEvent
    - AopLifeStage
    - AopLog
    - AopRelationship
    - AopSex
    - AopStressor
    - AopTaxon
    - AssayBioTargetFamily
    - Assay
    - AssignedLicense
    - BatchImport
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - Chemical
    - CitationBioTargetFamily
    - CitationRelationship
    - ConfidenceLevel
    - Directness
    - EventLifeStage
    - EventLog
    - EventSex
    - EventBioTargetFamily
    - EventTaxon
    - Evidence
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - ObservationCitation
    - OecdStatus
    - OrganTerm
    - Profile
    - RelationshipLifeStage
    - RelationshipLog
    - RelationshipSex
    - RelationshipTaxon
    - SexTerm
    - StressorChemical
    - StressorLog
    - EventComponent
    - TaxonTerm
    - UrlLink
    - User
    range: integer
    required: true
  term:
    name: term
    from_schema: http://example.org/aopwiki-emod
    alias: term
    owner: BiologicalObject
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - ConfidenceLevel
    - Directness
    - LifeStageTerm
    - OrganTerm
    - SexTerm
    - TaxonTerm
    range: string
  source:
    name: source
    from_schema: http://example.org/aopwiki-emod
    alias: source
    owner: BiologicalObject
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - TaxonTerm
    range: BiologicalObjectSourceEnum
  source_id:
    name: source_id
    from_schema: http://example.org/aopwiki-emod
    alias: source_id
    owner: BiologicalObject
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - TaxonTerm
    range: string
  description:
    name: description
    from_schema: http://example.org/aopwiki-emod
    alias: description
    owner: BiologicalObject
    domain_of:
    - AopLog
    - Assay
    - BatchImport
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - Directness
    - EventLog
    - License
    - OecdStatus
    - OrganTerm
    - RelationshipLog
    - StressorLog
    range: string
  url:
    name: url
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: url
    owner: BiologicalObject
    domain_of:
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - UrlLink
    range: string
  created_at:
    name: created_at
    description: Timestamp of when the record was created
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: created_at
    owner: BiologicalObject
    domain_of:
    - Aop
    - Event
    - Relationship
    - Stressor
    - BioTargetFamily
    - Observation
    - Citation
    - AopEvent
    - AopLifeStage
    - AopLog
    - AopRelationship
    - AopSex
    - AopStressor
    - AopTaxon
    - AssayBioTargetFamily
    - Assay
    - AssignedLicense
    - BatchImport
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - Chemical
    - CitationBioTargetFamily
    - CitationRelationship
    - ConfidenceLevel
    - Directness
    - EventLifeStage
    - EventLog
    - EventSex
    - EventBioTargetFamily
    - EventTaxon
    - Evidence
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - ObservationCitation
    - OecdStatus
    - OrganTerm
    - Profile
    - RelationshipLifeStage
    - RelationshipLog
    - RelationshipSex
    - RelationshipTaxon
    - SexTerm
    - StressorChemical
    - StressorLog
    - EventComponent
    - TaxonTerm
    - UrlLink
    range: datetime
  updated_at:
    name: updated_at
    description: Timestamp of when the record was last updated
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: updated_at
    owner: BiologicalObject
    domain_of:
    - Aop
    - Event
    - Relationship
    - Stressor
    - BioTargetFamily
    - Observation
    - Citation
    - AopEvent
    - AopLifeStage
    - AopLog
    - AopRelationship
    - AopSex
    - AopStressor
    - AopTaxon
    - AssayBioTargetFamily
    - Assay
    - AssignedLicense
    - BatchImport
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - Chemical
    - CitationBioTargetFamily
    - CitationRelationship
    - ConfidenceLevel
    - Directness
    - EventLifeStage
    - EventLog
    - EventSex
    - EventBioTargetFamily
    - EventTaxon
    - Evidence
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - ObservationCitation
    - OecdStatus
    - OrganTerm
    - Profile
    - RelationshipLifeStage
    - RelationshipLog
    - RelationshipSex
    - RelationshipTaxon
    - SexTerm
    - StressorChemical
    - StressorLog
    - EventComponent
    - TaxonTerm
    - UrlLink
    range: datetime