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Class: BiologicalObject

URI: http://example.org/aopwiki-emod/BiologicalObject

classDiagram class BiologicalObject click BiologicalObject href "../BiologicalObject/" BiologicalObject : created_at BiologicalObject : description BiologicalObject : id BiologicalObject : source BiologicalObject --> "0..1" BiologicalObjectSourceEnum : source click BiologicalObjectSourceEnum href "../BiologicalObjectSourceEnum/" BiologicalObject : source_id BiologicalObject : term BiologicalObject : updated_at BiologicalObject : url

Slots

Name Cardinality and Range Description Inheritance
created_at 0..1
Datetime		 Timestamp of when the record was created direct
updated_at 0..1
Datetime		 Timestamp of when the record was last updated direct
id 0..1
Integer		 direct
term 0..1
String		 direct
source 0..1
BiologicalObjectSourceEnum		 direct
source_id 0..1
String		 direct
description 0..1
String		 direct
url 0..1
String		 direct

Usages

used by used in type used
Assay objects range BiologicalObject
Observation biological_object_id range BiologicalObject
EventComponent biological_object_id range BiologicalObject

Identifier and Mapping Information

Schema Source

  • from schema: http://example.org/aopwiki-emod

Mappings

Mapping Type Mapped Value
self http://example.org/aopwiki-emod/BiologicalObject
native http://example.org/aopwiki-emod/BiologicalObject

LinkML Source

Direct

name: BiologicalObject
from_schema: http://example.org/aopwiki-emod
slots:
- created_at
- updated_at
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    - User
    range: integer
  term:
    name: term
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - CellTerm
    - ConfidenceLevel
    - Directness
    - LifeStageTerm
    - OrganTerm
    - SexTerm
    - TaxonTerm
  source:
    name: source
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - TaxonTerm
    range: BiologicalObjectSourceEnum
  source_id:
    name: source_id
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - TaxonTerm
  description:
    name: description
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Assay
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - Directness
    - ExperimentSetup
    - License
    - OecdStatus
    - OrganTerm
  url:
    name: url
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm

Induced

name: BiologicalObject
from_schema: http://example.org/aopwiki-emod
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    alias: id
    owner: BiologicalObject
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    - User
    range: integer
  term:
    name: term
    from_schema: http://example.org/aopwiki-emod
    alias: term
    owner: BiologicalObject
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - CellTerm
    - ConfidenceLevel
    - Directness
    - LifeStageTerm
    - OrganTerm
    - SexTerm
    - TaxonTerm
    range: string
  source:
    name: source
    from_schema: http://example.org/aopwiki-emod
    alias: source
    owner: BiologicalObject
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - TaxonTerm
    range: BiologicalObjectSourceEnum
  source_id:
    name: source_id
    from_schema: http://example.org/aopwiki-emod
    alias: source_id
    owner: BiologicalObject
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    - TaxonTerm
    range: string
  description:
    name: description
    from_schema: http://example.org/aopwiki-emod
    alias: description
    owner: BiologicalObject
    domain_of:
    - Assay
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - Directness
    - ExperimentSetup
    - License
    - OecdStatus
    - OrganTerm
    range: string
  url:
    name: url
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: url
    owner: BiologicalObject
    domain_of:
    - BiologicalObject
    - BiologicalProcess
    - CellTerm
    - OrganTerm
    range: string
  created_at:
    name: created_at
    description: Timestamp of when the record was created
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: created_at
    owner: BiologicalObject
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    range: datetime
  updated_at:
    name: updated_at
    description: Timestamp of when the record was last updated
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: updated_at
    owner: BiologicalObject
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    range: datetime