Class: Observation

URI: http://example.org/aopwiki-emod/Observation

classDiagram class Observation click Observation href "../Observation/" Observation : assay_id Observation --> "0..1" Assay : assay_id click Assay href "../Assay/" Observation : batch_import_id Observation : biological_action_id Observation --> "0..1" BiologicalAction : biological_action_id click BiologicalAction href "../BiologicalAction/" Observation : biological_object_id Observation --> "0..1" BiologicalObject : biological_object_id click BiologicalObject href "../BiologicalObject/" Observation : biological_process_id Observation --> "0..1" BiologicalProcess : biological_process_id click BiologicalProcess href "../BiologicalProcess/" Observation : citations Observation --> "*" ObservationCitation : citations click ObservationCitation href "../ObservationCitation/" Observation : created_at Observation : events Observation --> "*" Event : events click Event href "../Event/" Observation : id Observation : notes Observation : other Observation : phenotype Observation : process_is_phenotype Observation : stressor_id Observation : updated_at

Slots

Name	Cardinality and Range	Description	Inheritance
created_at	0..1 Datetime	Timestamp of when the record was created	direct
updated_at	0..1 Datetime	Timestamp of when the record was last updated	direct
id	1 Integer		direct
biological_action_id	0..1 BiologicalAction		direct
biological_process_id	0..1 BiologicalProcess		direct
biological_object_id	0..1 BiologicalObject		direct
assay_id	0..1 Assay		direct
batch_import_id	0..1 String		direct
stressor_id	0..1 String		direct
process_is_phenotype	0..1 String		direct
phenotype	0..1 String		direct
other	0..1 String		direct
notes	0..1 String		direct
events	* Event		direct
citations	* ObservationCitation		direct

Usages

used by	used in	type	used
Event	observations	range	Observation
Evidence	upstream_observation_id	range	Observation
Evidence	downstream_observation_id	range	Observation
ObservationCitation	observation_id	range	Observation

Identifier and Mapping Information

Schema Source

from schema: http://example.org/aopwiki-emod

Mappings

Mapping Type	Mapped Value
self	http://example.org/aopwiki-emod/Observation
native	http://example.org/aopwiki-emod/Observation

LinkML Source

Direct

name: Observation
from_schema: http://example.org/aopwiki-emod
slots:
- created_at
- updated_at
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    identifier: true
    domain_of:
    - Aop
    - Event
    - Relationship
    - Stressor
    - BioTargetFamily
    - Observation
    - Citation
    - AopEvent
    - AopLifeStage
    - AopLog
    - AopRelationship
    - AopSex
    - AopStressor
    - AopTaxon
    - AssayBioTargetFamily
    - Assay
    - AssignedLicense
    - BatchImport
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - Chemical
    - CitationBioTargetFamily
    - CitationRelationship
    - ConfidenceLevel
    - Directness
    - EventLifeStage
    - EventLog
    - EventSex
    - EventBioTargetFamily
    - EventTaxon
    - Evidence
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - ObservationCitation
    - OecdStatus
    - OrganTerm
    - Profile
    - RelationshipLifeStage
    - RelationshipLog
    - RelationshipSex
    - RelationshipTaxon
    - SexTerm
    - StressorChemical
    - StressorLog
    - EventComponent
    - TaxonTerm
    - UrlLink
    - User
    range: integer
    required: true
  biological_action_id:
    name: biological_action_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
    - Assay
    - EventComponent
    range: BiologicalAction
  biological_process_id:
    name: biological_process_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
    - EventComponent
    range: BiologicalProcess
  biological_object_id:
    name: biological_object_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
    - EventComponent
    range: BiologicalObject
  assay_id:
    name: assay_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
    - AssayBioTargetFamily
    range: Assay
  batch_import_id:
    name: batch_import_id
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BioTargetFamily
    - Observation
    - AopEvent
    - AssayBioTargetFamily
    - Assay
    - CitationBioTargetFamily
    - EventBioTargetFamily
    - HarmonizedAop
    - HarmonizedEvent
    - ObservationCitation
  stressor_id:
    name: stressor_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
    - AopStressor
    - StressorChemical
    - StressorLog
  process_is_phenotype:
    name: process_is_phenotype
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
  phenotype:
    name: phenotype
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
  other:
    name: other
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
  notes:
    name: notes
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
    - Evidence
  events:
    name: events
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Aop
    - BioTargetFamily
    - Observation
    - Assay
    - LifeStageTerm
    - SexTerm
    - TaxonTerm
    range: Event
    multivalued: true
  citations:
    name: citations
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BioTargetFamily
    - Observation
    range: ObservationCitation
    multivalued: true

Induced

name: Observation
from_schema: http://example.org/aopwiki-emod
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    identifier: true
    alias: id
    owner: Observation
    domain_of:
    - Aop
    - Event
    - Relationship
    - Stressor
    - BioTargetFamily
    - Observation
    - Citation
    - AopEvent
    - AopLifeStage
    - AopLog
    - AopRelationship
    - AopSex
    - AopStressor
    - AopTaxon
    - AssayBioTargetFamily
    - Assay
    - AssignedLicense
    - BatchImport
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - Chemical
    - CitationBioTargetFamily
    - CitationRelationship
    - ConfidenceLevel
    - Directness
    - EventLifeStage
    - EventLog
    - EventSex
    - EventBioTargetFamily
    - EventTaxon
    - Evidence
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - ObservationCitation
    - OecdStatus
    - OrganTerm
    - Profile
    - RelationshipLifeStage
    - RelationshipLog
    - RelationshipSex
    - RelationshipTaxon
    - SexTerm
    - StressorChemical
    - StressorLog
    - EventComponent
    - TaxonTerm
    - UrlLink
    - User
    range: integer
    required: true
  biological_action_id:
    name: biological_action_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: biological_action_id
    owner: Observation
    domain_of:
    - Observation
    - Assay
    - EventComponent
    range: BiologicalAction
  biological_process_id:
    name: biological_process_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: biological_process_id
    owner: Observation
    domain_of:
    - Observation
    - EventComponent
    range: BiologicalProcess
  biological_object_id:
    name: biological_object_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: biological_object_id
    owner: Observation
    domain_of:
    - Observation
    - EventComponent
    range: BiologicalObject
  assay_id:
    name: assay_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: assay_id
    owner: Observation
    domain_of:
    - Observation
    - AssayBioTargetFamily
    range: Assay
  batch_import_id:
    name: batch_import_id
    from_schema: http://example.org/aopwiki-emod
    alias: batch_import_id
    owner: Observation
    domain_of:
    - BioTargetFamily
    - Observation
    - AopEvent
    - AssayBioTargetFamily
    - Assay
    - CitationBioTargetFamily
    - EventBioTargetFamily
    - HarmonizedAop
    - HarmonizedEvent
    - ObservationCitation
    range: string
  stressor_id:
    name: stressor_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: stressor_id
    owner: Observation
    domain_of:
    - Observation
    - AopStressor
    - StressorChemical
    - StressorLog
    range: string
  process_is_phenotype:
    name: process_is_phenotype
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: process_is_phenotype
    owner: Observation
    domain_of:
    - Observation
    range: string
  phenotype:
    name: phenotype
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: phenotype
    owner: Observation
    domain_of:
    - Observation
    range: string
  other:
    name: other
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: other
    owner: Observation
    domain_of:
    - Observation
    range: string
  notes:
    name: notes
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: notes
    owner: Observation
    domain_of:
    - Observation
    - Evidence
    range: string
  events:
    name: events
    from_schema: http://example.org/aopwiki-emod
    alias: events
    owner: Observation
    domain_of:
    - Aop
    - BioTargetFamily
    - Observation
    - Assay
    - LifeStageTerm
    - SexTerm
    - TaxonTerm
    range: Event
    multivalued: true
  citations:
    name: citations
    from_schema: http://example.org/aopwiki-emod
    alias: citations
    owner: Observation
    domain_of:
    - BioTargetFamily
    - Observation
    range: ObservationCitation
    multivalued: true
  created_at:
    name: created_at
    description: Timestamp of when the record was created
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: created_at
    owner: Observation
    domain_of:
    - Aop
    - Event
    - Relationship
    - Stressor
    - BioTargetFamily
    - Observation
    - Citation
    - AopEvent
    - AopLifeStage
    - AopLog
    - AopRelationship
    - AopSex
    - AopStressor
    - AopTaxon
    - AssayBioTargetFamily
    - Assay
    - AssignedLicense
    - BatchImport
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - Chemical
    - CitationBioTargetFamily
    - CitationRelationship
    - ConfidenceLevel
    - Directness
    - EventLifeStage
    - EventLog
    - EventSex
    - EventBioTargetFamily
    - EventTaxon
    - Evidence
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - ObservationCitation
    - OecdStatus
    - OrganTerm
    - Profile
    - RelationshipLifeStage
    - RelationshipLog
    - RelationshipSex
    - RelationshipTaxon
    - SexTerm
    - StressorChemical
    - StressorLog
    - EventComponent
    - TaxonTerm
    - UrlLink
    range: datetime
  updated_at:
    name: updated_at
    description: Timestamp of when the record was last updated
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: updated_at
    owner: Observation
    domain_of:
    - Aop
    - Event
    - Relationship
    - Stressor
    - BioTargetFamily
    - Observation
    - Citation
    - AopEvent
    - AopLifeStage
    - AopLog
    - AopRelationship
    - AopSex
    - AopStressor
    - AopTaxon
    - AssayBioTargetFamily
    - Assay
    - AssignedLicense
    - BatchImport
    - BiologicalAction
    - BiologicalObject
    - BiologicalOrganization
    - BiologicalProcess
    - CellTerm
    - ChemicalSynonym
    - Chemical
    - CitationBioTargetFamily
    - CitationRelationship
    - ConfidenceLevel
    - Directness
    - EventLifeStage
    - EventLog
    - EventSex
    - EventBioTargetFamily
    - EventTaxon
    - Evidence
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - ObservationCitation
    - OecdStatus
    - OrganTerm
    - Profile
    - RelationshipLifeStage
    - RelationshipLog
    - RelationshipSex
    - RelationshipTaxon
    - SexTerm
    - StressorChemical
    - StressorLog
    - EventComponent
    - TaxonTerm
    - UrlLink
    range: datetime