Class: Observation

URI: http://example.org/aopwiki-emod/Observation

classDiagram class Observation click Observation href "../Observation/" Observation : assay_id Observation --> "0..1" Assay : assay_id click Assay href "../Assay/" Observation : biological_action_id Observation --> "0..1" BiologicalAction : biological_action_id click BiologicalAction href "../BiologicalAction/" Observation : biological_object_id Observation --> "0..1" BiologicalObject : biological_object_id click BiologicalObject href "../BiologicalObject/" Observation : biological_object_str Observation : biological_process_id Observation --> "0..1" BiologicalProcess : biological_process_id click BiologicalProcess href "../BiologicalProcess/" Observation : citations Observation --> "*" Citation : citations click Citation href "../Citation/" Observation : created_at Observation : events Observation --> "*" Event : events click Event href "../Event/" Observation : experiment_setup_id Observation --> "0..1" ExperimentSetup : experiment_setup_id click ExperimentSetup href "../ExperimentSetup/" Observation : id Observation : phenotype Observation : stressor_id Observation --> "0..1" Stressor : stressor_id click Stressor href "../Stressor/" Observation : updated_at

Slots

Name	Cardinality and Range	Description	Inheritance
created_at	0..1 Datetime	Timestamp of when the record was created	direct
updated_at	0..1 Datetime	Timestamp of when the record was last updated	direct
id	1 Integer		direct
biological_action_id	0..1 BiologicalAction		direct
biological_process_id	0..1 BiologicalProcess		direct
biological_object_id	0..1 BiologicalObject		direct
assay_id	0..1 Assay		direct
stressor_id	0..1 Stressor		direct
phenotype	0..1 String		direct
experiment_setup_id	0..1 ExperimentSetup		direct
biological_object_str	0..1 String		direct
events	* Event		direct
citations	* Citation		direct

Usages

used by	used in	type	used
Event	observations	range	Observation
Evidence	upstream_observation_id	range	Observation
Evidence	downstream_observation_id	range	Observation
Citation	observations	range	Observation

Identifier and Mapping Information

Schema Source

from schema: http://example.org/aopwiki-emod

Mappings

Mapping Type	Mapped Value
self	http://example.org/aopwiki-emod/Observation
native	http://example.org/aopwiki-emod/Observation

LinkML Source

Direct

name: Observation
from_schema: http://example.org/aopwiki-emod
slots:
- created_at
- updated_at
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    identifier: true
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    - User
    range: integer
    required: true
  biological_action_id:
    name: biological_action_id
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Assay
    - Observation
    - EventComponent
    range: BiologicalAction
    inlined: true
  biological_process_id:
    name: biological_process_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
    - EventComponent
    range: BiologicalProcess
    inlined: true
  biological_object_id:
    name: biological_object_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
    - EventComponent
    range: BiologicalObject
    inlined: true
  assay_id:
    name: assay_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
    - ExperimentSetup
    range: Assay
    inlined: true
  stressor_id:
    name: stressor_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
    - AopToPrototypicalStressor
    range: Stressor
    inlined: true
  phenotype:
    name: phenotype
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
  experiment_setup_id:
    name: experiment_setup_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
    range: ExperimentSetup
    inlined: true
  biological_object_str:
    name: biological_object_str
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    domain_of:
    - Observation
  events:
    name: events
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Aop
    - Assay
    - Observation
    - BioTargetFamily
    - TestGuideline
    range: Event
    multivalued: true
  citations:
    name: citations
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Assay
    - Observation
    - BioTargetFamily
    range: Citation
    multivalued: true

Induced

name: Observation
from_schema: http://example.org/aopwiki-emod
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    identifier: true
    alias: id
    owner: Observation
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    - User
    range: integer
    required: true
  biological_action_id:
    name: biological_action_id
    from_schema: http://example.org/aopwiki-emod
    alias: biological_action_id
    owner: Observation
    domain_of:
    - Assay
    - Observation
    - EventComponent
    range: BiologicalAction
    inlined: true
  biological_process_id:
    name: biological_process_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: biological_process_id
    owner: Observation
    domain_of:
    - Observation
    - EventComponent
    range: BiologicalProcess
    inlined: true
  biological_object_id:
    name: biological_object_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: biological_object_id
    owner: Observation
    domain_of:
    - Observation
    - EventComponent
    range: BiologicalObject
    inlined: true
  assay_id:
    name: assay_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: assay_id
    owner: Observation
    domain_of:
    - Observation
    - ExperimentSetup
    range: Assay
    inlined: true
  stressor_id:
    name: stressor_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: stressor_id
    owner: Observation
    domain_of:
    - Observation
    - AopToPrototypicalStressor
    range: Stressor
    inlined: true
  phenotype:
    name: phenotype
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: phenotype
    owner: Observation
    domain_of:
    - Observation
    range: string
  experiment_setup_id:
    name: experiment_setup_id
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: experiment_setup_id
    owner: Observation
    domain_of:
    - Observation
    range: ExperimentSetup
    inlined: true
  biological_object_str:
    name: biological_object_str
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: biological_object_str
    owner: Observation
    domain_of:
    - Observation
    range: string
  events:
    name: events
    from_schema: http://example.org/aopwiki-emod
    alias: events
    owner: Observation
    domain_of:
    - Aop
    - Assay
    - Observation
    - BioTargetFamily
    - TestGuideline
    range: Event
    multivalued: true
  citations:
    name: citations
    from_schema: http://example.org/aopwiki-emod
    alias: citations
    owner: Observation
    domain_of:
    - Assay
    - Observation
    - BioTargetFamily
    range: Citation
    multivalued: true
  created_at:
    name: created_at
    description: Timestamp of when the record was created
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: created_at
    owner: Observation
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    range: datetime
  updated_at:
    name: updated_at
    description: Timestamp of when the record was last updated
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: updated_at
    owner: Observation
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    range: datetime