Class: LevelOfBiologicalOrganization

The scale of biological organisation at which a Key Event occurs, from molecular to population level. The AOP-Wiki records it as one structured term selected from a fixed list; the permitted values and their definitions are BiologicalOrganizationEnum. A Key Event is defined within a single level, and only a Key Event Relationship transitions from one level to another. The level selected also determines which structured terms are available for describing the Key Event's components. The AOP Developers' Handbook recommends that an AOP include at least one Key Event at each major level: molecular, cellular, tissue, organ, and individual.

URI: http://example.org/aopwiki-emod/LevelOfBiologicalOrganization

classDiagram class LevelOfBiologicalOrganization click LevelOfBiologicalOrganization href "../LevelOfBiologicalOrganization/" LevelOfBiologicalOrganization : created_at LevelOfBiologicalOrganization : id LevelOfBiologicalOrganization : term LevelOfBiologicalOrganization --> "0..1" BiologicalOrganizationEnum : term click BiologicalOrganizationEnum href "../BiologicalOrganizationEnum/" LevelOfBiologicalOrganization : updated_at

Slots

Name	Cardinality and Range	Description	Inheritance
created_at	0..1 Datetime	Timestamp of when the record was created	direct
updated_at	0..1 Datetime	Timestamp of when the record was last updated	direct
id	0..1 Integer		direct
term	0..1 BiologicalOrganizationEnum		direct

Usages

used by	used in	type	used
Event	biological_organization_id	range	LevelOfBiologicalOrganization

Identifier and Mapping Information

Schema Source

from schema: http://example.org/aopwiki-emod

Mappings

Mapping Type	Mapped Value
self	http://example.org/aopwiki-emod/LevelOfBiologicalOrganization
native	http://example.org/aopwiki-emod/LevelOfBiologicalOrganization

LinkML Source

Direct

name: LevelOfBiologicalOrganization
description: 'The scale of biological organisation at which a Key Event occurs, from
  molecular to population level. The AOP-Wiki records it as one structured term selected
  from a fixed list; the permitted values and their definitions are BiologicalOrganizationEnum.
  A Key Event is defined within a single level, and only a Key Event Relationship
  transitions from one level to another. The level selected also determines which
  structured terms are available for describing the Key Event''s components. The AOP
  Developers'' Handbook recommends that an AOP include at least one Key Event at each
  major level: molecular, cellular, tissue, organ, and individual.'
from_schema: http://example.org/aopwiki-emod
slots:
- created_at
- updated_at
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    - User
    range: integer
  term:
    name: term
    from_schema: http://example.org/aopwiki-emod
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - CellTerm
    - ConfidenceLevel
    - Directness
    - LifeStageTerm
    - OrganTerm
    - SexTerm
    - TaxonTerm
    range: BiologicalOrganizationEnum

Induced

name: LevelOfBiologicalOrganization
description: 'The scale of biological organisation at which a Key Event occurs, from
  molecular to population level. The AOP-Wiki records it as one structured term selected
  from a fixed list; the permitted values and their definitions are BiologicalOrganizationEnum.
  A Key Event is defined within a single level, and only a Key Event Relationship
  transitions from one level to another. The level selected also determines which
  structured terms are available for describing the Key Event''s components. The AOP
  Developers'' Handbook recommends that an AOP include at least one Key Event at each
  major level: molecular, cellular, tissue, organ, and individual.'
from_schema: http://example.org/aopwiki-emod
attributes:
  id:
    name: id
    from_schema: http://example.org/aopwiki-emod
    alias: id
    owner: LevelOfBiologicalOrganization
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    - User
    range: integer
  term:
    name: term
    from_schema: http://example.org/aopwiki-emod
    alias: term
    owner: LevelOfBiologicalOrganization
    domain_of:
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - CellTerm
    - ConfidenceLevel
    - Directness
    - LifeStageTerm
    - OrganTerm
    - SexTerm
    - TaxonTerm
    range: BiologicalOrganizationEnum
  created_at:
    name: created_at
    description: Timestamp of when the record was created
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: created_at
    owner: LevelOfBiologicalOrganization
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    range: datetime
  updated_at:
    name: updated_at
    description: Timestamp of when the record was last updated
    from_schema: http://example.org/aopwiki-emod
    rank: 1000
    alias: updated_at
    owner: LevelOfBiologicalOrganization
    domain_of:
    - Aop
    - Event
    - KeRelationship
    - Assay
    - Observation
    - Evidence
    - Stressor
    - Citation
    - BiologicalAction
    - BiologicalObject
    - BiologicalProcess
    - LevelOfBiologicalOrganization
    - AopToEvent
    - AopToLifeStage
    - AopToKeRelationship
    - AopToSex
    - AopToPrototypicalStressor
    - AopToTaxon
    - AssignedLicense
    - BioTargetFamily
    - CellTerm
    - ConfidenceLevel
    - Directness
    - EventToLifeStage
    - EventToSex
    - EventToTaxon
    - ExperimentSetup
    - ExperimentType
    - Handbook
    - HarmonizedAop
    - HarmonizedEvent
    - License
    - LifeStageTerm
    - OecdStatus
    - OrganTerm
    - KeRelationshipToLifeStage
    - KeRelationshipToSex
    - KeRelationshipToTaxon
    - SexTerm
    - EventComponent
    - TaxonTerm
    - TestGuideline
    range: datetime