Class: CiliaryFunctionOutput

name: CiliaryFunctionOutput
description: Measurement results from a ciliary function assay. Contains the measured
  values for ciliary beat frequency, active area, cilia morphology, and ciliated cell
  populations.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
slots:
- beat_frequency_hz
- active_area_percentage
- cilia_length
- cilia_per_cell
- percentage_ciliated_cells
- cell_type_ratios
- ciliary_motion_patterns
- ciliary_beat_amplitude

name: CiliaryFunctionOutput
description: Measurement results from a ciliary function assay. Contains the measured
  values for ciliary beat frequency, active area, cilia morphology, and ciliated cell
  populations.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
attributes:
  beat_frequency_hz:
    name: beat_frequency_hz
    description: Ciliary beat frequency measured in Hz. TIER 1 - critical for assessing
      ciliary function.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: beat_frequency_hz
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: QuantityValue
    inlined: true
  active_area_percentage:
    name: active_area_percentage
    description: Percentage of epithelial surface with actively beating cilia. TIER
      1 - critical for assessing ciliary coverage.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: active_area_percentage
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: QuantityValue
    inlined: true
  cilia_length:
    name: cilia_length
    description: Length of cilia measured in micrometers. TIER 1 - morphological assessment
      of cilia.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: cilia_length
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: QuantityValue
    inlined: true
  cilia_per_cell:
    name: cilia_per_cell
    description: Number of cilia per ciliated cell. TIER 1.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: cilia_per_cell
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: QuantityValue
    inlined: true
  percentage_ciliated_cells:
    name: percentage_ciliated_cells
    description: Percentage of cells that are ciliated. TIER 1 - critical for understanding
      ciliated cell populations.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: percentage_ciliated_cells
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: QuantityValue
    inlined: true
  cell_type_ratios:
    name: cell_type_ratios
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: cell_type_ratios
    owner: CiliaryFunctionOutput
    domain_of:
    - CellularSystem
    - CiliaryFunctionOutput
    range: string
    multivalued: true
  ciliary_motion_patterns:
    name: ciliary_motion_patterns
    description: Patterns of ciliary motion (coordinated, dyskinetic, immotile). TIER
      2 - supporting information.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: ciliary_motion_patterns
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: CiliaryMotionPatternEnum
  ciliary_beat_amplitude:
    name: ciliary_beat_amplitude
    description: Amplitude of ciliary beat. TIER 2.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: ciliary_beat_amplitude
    owner: CiliaryFunctionOutput
    domain_of:
    - CiliaryFunctionOutput
    range: QuantityValue
    inlined: true
  evidence:
    name: evidence
    description: Evidence items backing this object's claims. Each one carries an
      exact quote from a cited publication.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: evidence
    owner: CiliaryFunctionOutput
    domain_of:
    - KeyEvent
    - KeyEventRelationship
    - Assay
    - AssayOutputMeasurement
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  experimental_group:
    name: experimental_group
    description: 'The role of this output record''s group in the experimental design:
      control, vehicle control, baseline, treated, recovery, or sham. Lets extraction
      distinguish the control/baseline response from the treated response so a change
      relative to control can be assembled downstream.'
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: experimental_group
    owner: CiliaryFunctionOutput
    domain_of:
    - AssayOutputMeasurement
    range: ExperimentalGroupEnum
  measured_under:
    name: measured_under
    description: Reference (by id) to the specific ExposureCondition this output record
      was measured under. Links each set of response values to the concentration/treatment
      it corresponds to, so a dose-response series keeps each response paired with
      its exposure level. The referenced condition should be listed in the assay's
      has_exposure_condition.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: measured_under
    owner: CiliaryFunctionOutput
    domain_of:
    - AssayOutputMeasurement
    range: ExposureCondition
    inlined: false
  data_in_figure_only:
    name: data_in_figure_only
    description: True when the quantitative values for this output record are reported
      only in a figure or chart and could not be read from the text. The record then
      documents that the endpoint was measured and where its data lives (via an evidence
      item's figure_reference and article_section), without numeric values. This keeps
      figure-only results visible to reviewers in the workbook instead of silently
      dropping them.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: data_in_figure_only
    owner: CiliaryFunctionOutput
    domain_of:
    - AssayOutputMeasurement
    range: boolean
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: CiliaryFunctionOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: CiliaryFunctionOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string
  description:
    name: description
    description: A detailed description of the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: CiliaryFunctionOutput
    domain_of:
    - NamedThing
    range: string