Class: FoxJExpressionOutput

name: FoxJExpressionOutput
description: Measurement results from a FoxJ1 expression assay. Contains the measured
  values for FoxJ1 mRNA, protein, and cellular localization.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
slots:
- foxj1_mrna_expression
- foxj1_protein_expression
- foxj1_positive_cell_percentage
- foxj1_nuclear_localization

name: FoxJExpressionOutput
description: Measurement results from a FoxJ1 expression assay. Contains the measured
  values for FoxJ1 mRNA, protein, and cellular localization.
from_schema: https://w3id.org/EHS-Data-Standards/soma
is_a: AssayOutputMeasurement
attributes:
  foxj1_mrna_expression:
    name: foxj1_mrna_expression
    description: FoxJ1 mRNA expression level.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: foxj1_mrna_expression
    owner: FoxJExpressionOutput
    domain_of:
    - FoxJExpressionOutput
    range: QuantityValue
    inlined: true
  foxj1_protein_expression:
    name: foxj1_protein_expression
    description: FoxJ1 protein expression level.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: foxj1_protein_expression
    owner: FoxJExpressionOutput
    domain_of:
    - FoxJExpressionOutput
    range: QuantityValue
    inlined: true
  foxj1_positive_cell_percentage:
    name: foxj1_positive_cell_percentage
    description: Percentage of FoxJ1-positive cells.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: foxj1_positive_cell_percentage
    owner: FoxJExpressionOutput
    domain_of:
    - FoxJExpressionOutput
    range: QuantityValue
    inlined: true
  foxj1_nuclear_localization:
    name: foxj1_nuclear_localization
    description: FoxJ1 nuclear localization.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: foxj1_nuclear_localization
    owner: FoxJExpressionOutput
    domain_of:
    - FoxJExpressionOutput
    range: QuantityValue
    inlined: true
  evidence:
    name: evidence
    description: Evidence items backing this object's claims. Each one carries an
      exact quote from a cited publication.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: evidence
    owner: FoxJExpressionOutput
    domain_of:
    - KeyEvent
    - KeyEventRelationship
    - Assay
    - AssayOutputMeasurement
    range: EvidenceItem
    recommended: true
    multivalued: true
    inlined: true
    inlined_as_list: true
  experimental_group:
    name: experimental_group
    description: 'The role of this output record''s group in the experimental design:
      control, vehicle control, baseline, treated, recovery, or sham. Lets extraction
      distinguish the control/baseline response from the treated response so a change
      relative to control can be assembled downstream.'
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: experimental_group
    owner: FoxJExpressionOutput
    domain_of:
    - AssayOutputMeasurement
    range: ExperimentalGroupEnum
  measured_under:
    name: measured_under
    description: Reference (by id) to the specific ExposureCondition this output record
      was measured under. Links each set of response values to the concentration/treatment
      it corresponds to, so a dose-response series keeps each response paired with
      its exposure level. The referenced condition should be listed in the assay's
      has_exposure_condition.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: measured_under
    owner: FoxJExpressionOutput
    domain_of:
    - AssayOutputMeasurement
    range: ExposureCondition
    inlined: false
  data_in_figure_only:
    name: data_in_figure_only
    description: True when the quantitative values for this output record are reported
      only in a figure or chart and could not be read from the text. The record then
      documents that the endpoint was measured and where its data lives (via an evidence
      item's figure_reference and article_section), without numeric values. This keeps
      figure-only results visible to reviewers in the workbook instead of silently
      dropping them.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    alias: data_in_figure_only
    owner: FoxJExpressionOutput
    domain_of:
    - AssayOutputMeasurement
    range: boolean
  id:
    name: id
    description: A unique identifier for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    identifier: true
    alias: id
    owner: FoxJExpressionOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: uriorcurie
    required: true
  name:
    name: name
    description: A human-readable name for the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:name
    alias: name
    owner: FoxJExpressionOutput
    domain_of:
    - NamedThing
    - Unit
    - NamedEntity
    range: string
  description:
    name: description
    description: A detailed description of the entity.
    from_schema: https://w3id.org/EHS-Data-Standards/soma
    rank: 1000
    slot_uri: schema:description
    alias: description
    owner: FoxJExpressionOutput
    domain_of:
    - NamedThing
    range: string